Difference between revisions of "RNA-Holder"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PFRUCTPHOS-RXN 6PFRUCTPHOS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** pyrophosphate-d...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=RNA-Holder RNA-Holder] == * common name: ** RNA * Synonym(s): == Reaction(s) known to consume...")
 
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PFRUCTPHOS-RXN 6PFRUCTPHOS-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=RNA-Holder RNA-Holder] ==
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* direction:
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** LEFT-TO-RIGHT
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* common name:
 
* common name:
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** pyrophosphate-dependent_phosphofructose_kinase
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** RNA
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.1.11 EC-2.7.1.11]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[3.1.27.1-RXN]]
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** 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[FRUCTOSE-16-DIPHOSPHATE]][c]
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* [[RME294]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 1 β-D-fructofuranose 6-phosphate[c] '''+''' 1 ATP[c] '''=>''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 fructose 1,6-bisphosphate[c]
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* [[RME256]]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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* [[DNA-DIRECTED-RNA-POLYMERASE-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_5733]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_596]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
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** '''9''' reactions found over '''10''' reactions in the full pathway
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* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
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** '''12''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
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** '''11''' reactions found over '''11''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: common name=RNA}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16109 16109]
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{{#set: consumed by=3.1.27.1-RXN|RME294}}
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* LIGAND-RXN:
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{{#set: produced by=RME256}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00756 R00756]
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{{#set: reversible reaction associated=DNA-DIRECTED-RNA-POLYMERASE-RXN}}
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/Q7M3F7 Q7M3F7]
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** [http://www.uniprot.org/uniprot/Q7M4J2 Q7M4J2]
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** [http://www.uniprot.org/uniprot/P12382 P12382]
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** [http://www.uniprot.org/uniprot/Q27665 Q27665]
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** [http://www.uniprot.org/uniprot/P52034 P52034]
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** [http://www.uniprot.org/uniprot/Q7M4K9 Q7M4K9]
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** [http://www.uniprot.org/uniprot/P43863 P43863]
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** [http://www.uniprot.org/uniprot/P20275 P20275]
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** [http://www.uniprot.org/uniprot/P47457 P47457]
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** [http://www.uniprot.org/uniprot/Q01813 Q01813]
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** [http://www.uniprot.org/uniprot/Q07636 Q07636]
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** [http://www.uniprot.org/uniprot/P16861 P16861]
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** [http://www.uniprot.org/uniprot/P16862 P16862]
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** [http://www.uniprot.org/uniprot/P00512 P00512]
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** [http://www.uniprot.org/uniprot/P0A796 P0A796]
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** [http://www.uniprot.org/uniprot/P06999 P06999]
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** [http://www.uniprot.org/uniprot/P08237 P08237]
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** [http://www.uniprot.org/uniprot/P00511 P00511]
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** [http://www.uniprot.org/uniprot/P70927 P70927]
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** [http://www.uniprot.org/uniprot/Q7M3F5 Q7M3F5]
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** [http://www.uniprot.org/uniprot/Q9TWY0 Q9TWY0]
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** [http://www.uniprot.org/uniprot/P30835 P30835]
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** [http://www.uniprot.org/uniprot/Q03215 Q03215]
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** [http://www.uniprot.org/uniprot/Q03216 Q03216]
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** [http://www.uniprot.org/uniprot/P80019 P80019]
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** [http://www.uniprot.org/uniprot/Q59214 Q59214]
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** [http://www.uniprot.org/uniprot/Q27705 Q27705]
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** [http://www.uniprot.org/uniprot/P75476 P75476]
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** [http://www.uniprot.org/uniprot/P72830 P72830]
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** [http://www.uniprot.org/uniprot/Q55988 Q55988]
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** [http://www.uniprot.org/uniprot/Q49084 Q49084]
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** [http://www.uniprot.org/uniprot/O08333 O08333]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=pyrophosphate-dependent_phosphofructose_kinase}}
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{{#set: ec number=EC-2.7.1.11}}
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{{#set: gene associated=Tiso_gene_5733|Tiso_gene_596}}
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{{#set: in pathway=PWY-1042|GLYCOLYSIS|PWY-7385|PWY-1861|ANAGLYCOLYSIS-PWY|PWY-5484}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|esiliculosus|athaliana}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 21:15, 21 March 2018

Metabolite RNA-Holder

  • common name:
    • RNA
  • Synonym(s):

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RNA-Holder&oldid=47270"