Difference between revisions of "QUINOPRIBOTRANS-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINESYN-RXN SPERMIDINESYN-RXN] == * direction: ** REVERSIBLE * common name: ** spermidine_syn...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=QUINOPRIBOTRANS-RXN QUINOPRIBOTRANS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** endo-_-...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINESYN-RXN SPERMIDINESYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=QUINOPRIBOTRANS-RXN QUINOPRIBOTRANS-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** spermidine_synthase
+
** endo-_-beta-glucanase
 +
** nicotinate-nucleotide_pyrophosphorylase
 +
** phosphoglycolate_phosphatase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.16 EC-2.5.1.16]
+
** [http://enzyme.expasy.org/EC/2.4.2.19 EC-2.4.2.19]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PUTRESCINE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINAMINE]][c] '''<=>''' 1 [[SPERMIDINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[5-METHYLTHIOADENOSINE]][c]
+
** 2 [[PROTON]][c] '''+''' 1 [[PRPP]][c] '''+''' 1 [[QUINOLINATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[NICOTINATE_NUCLEOTIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 putrescine[c] '''+''' 1 S-adenosyl 3-(methylthio)propylamine[c] '''<=>''' 1 spermidine[c] '''+''' 1 H+[c] '''+''' 1 S-methyl-5'-thioadenosine[c]
+
** 2 H+[c] '''+''' 1 5-phospho-&alpha;-D-ribose 1-diphosphate[c] '''+''' 1 quinolinate[c] '''=>''' 1 CO2[c] '''+''' 1 diphosphate[c] '''+''' 1 &beta;-nicotinate D-ribonucleotide[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_16718]]
+
* Gene: [[Tiso_gene_141]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_17081]]
+
** Source: [[orthology-athaliana]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[orthology-synechocystis]]
−
* [[Tiso_gene_17803]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-creinhardtii]]
−
***AUTOMATED-NAME-MATCH
+
* Gene: [[Tiso_gene_12892]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[creinhardtii]]
+
* Gene: [[Tiso_gene_8723]]
−
* [[Tiso_gene_16717]]
+
** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***AUTOMATED-NAME-MATCH
+
* Gene: [[Tiso_gene_140]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=BSUBPOLYAMSYN-PWY BSUBPOLYAMSYN-PWY]
+
* [[PWY-5316]], nicotine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5316 PWY-5316]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''2''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5653]], NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5653 PWY-5653]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PYRIDNUCSYN-PWY]], NAD biosynthesis I (from aspartate): [http://metacyc.org/META/NEW-IMAGE?object=PYRIDNUCSYN-PWY PYRIDNUCSYN-PWY]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7342]], superpathway of nicotine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7342 PWY-7342]
 +
** '''3''' reactions found over '''13''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[creinhardtii]]
+
*** Tool: [[pantograph]]
−
*** [[athaliana]]
+
** Source: [[orthology-creinhardtii]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-synechocystis]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[in-silico_annotation]]
+
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12721 12721]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12733 12733]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01920 R01920]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03348 R03348]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P19623 P19623]
+
** [http://www.uniprot.org/uniprot/Q9JSX8 Q9JSX8]
−
** [http://www.uniprot.org/uniprot/Q57761 Q57761]
+
** [http://www.uniprot.org/uniprot/Q57916 Q57916]
−
** [http://www.uniprot.org/uniprot/Q12074 Q12074]
+
** [http://www.uniprot.org/uniprot/P30011 P30011]
−
** [http://www.uniprot.org/uniprot/Q12455 Q12455]
+
** [http://www.uniprot.org/uniprot/P46714 P46714]
−
** [http://www.uniprot.org/uniprot/P09158 P09158]
+
** [http://www.uniprot.org/uniprot/Q15274 Q15274]
−
** [http://www.uniprot.org/uniprot/O48660 O48660]
+
** [http://www.uniprot.org/uniprot/P77938 P77938]
−
{{#set: direction=REVERSIBLE}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=spermidine_synthase}}
+
{{#set: common name=endo-_-beta-glucanase}}
−
{{#set: ec number=EC-2.5.1.16}}
+
{{#set: common name=nicotinate-nucleotide_pyrophosphorylase}}
−
{{#set: gene associated=Tiso_gene_16718|Tiso_gene_17081|Tiso_gene_17803|Tiso_gene_16717}}
+
{{#set: common name=phosphoglycolate_phosphatase}}
−
{{#set: in pathway=BSUBPOLYAMSYN-PWY}}
+
{{#set: ec number=EC-2.4.2.19}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: gene associated=Tiso_gene_141|Tiso_gene_12892|Tiso_gene_8723|Tiso_gene_140}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: in pathway=PWY-5316|PWY-5653|PYRIDNUCSYN-PWY|PWY-7342}}
−
{{#set: reconstruction source=creinhardtii|athaliana|esiliculosus}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|orthology-creinhardtii|orthology-synechocystis|orthology-esiliculosus}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 21:16, 21 March 2018

Reaction QUINOPRIBOTRANS-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • endo-_-beta-glucanase
    • nicotinate-nucleotide_pyrophosphorylase
    • phosphoglycolate_phosphatase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5316, nicotine biosynthesis: PWY-5316
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-5653, NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde: PWY-5653
    • 3 reactions found over 4 reactions in the full pathway
  • PYRIDNUCSYN-PWY, NAD biosynthesis I (from aspartate): PYRIDNUCSYN-PWY
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7342, superpathway of nicotine biosynthesis: PWY-7342
    • 3 reactions found over 13 reactions in the full pathway

Reconstruction information

External links






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