Difference between revisions of "QUINOPRIBOTRANS-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=4-CYTIDINE-5-DIPHOSPHO-2-C 4-CYTIDINE-5-DIPHOSPHO-2-C] == * smiles: ** CC(O)(CO)C(O)COP(OP([O-]...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=QUINOPRIBOTRANS-RXN QUINOPRIBOTRANS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** endo-_-...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=4-CYTIDINE-5-DIPHOSPHO-2-C 4-CYTIDINE-5-DIPHOSPHO-2-C] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=QUINOPRIBOTRANS-RXN QUINOPRIBOTRANS-RXN] ==
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* smiles:
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* direction:
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** CC(O)(CO)C(O)COP(OP([O-])(=O)OCC2(C(C(O)C(N1(C(N=C(C=C1)N)=O))O2)O))([O-])=O
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=YFAUKWZNPVBCFF-XHIBXCGHSA-L
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* common name:
 
* common name:
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** 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
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** endo-_-beta-glucanase
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* molecular weight:
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** nicotinate-nucleotide_pyrophosphorylase
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** 519.295   
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** phosphoglycolate_phosphatase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.4.2.19 EC-2.4.2.19]
 
* Synonym(s):
 
* Synonym(s):
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** CDP-ME
 
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** CDP-methyl-D-erythritol
 
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** 4-diphosphocytidyl-2C-methyl-D-erythritol
 
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** 4-diphosphocytidyl-2-C-methylerythritol
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[2.7.1.148-RXN]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 2 [[PROTON]][c] '''+''' 1 [[PRPP]][c] '''+''' 1 [[QUINOLINATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[NICOTINATE_NUCLEOTIDE]][c]
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* [[2.7.7.60-RXN]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 2 H+[c] '''+''' 1 5-phospho-α-D-ribose 1-diphosphate[c] '''+''' 1 quinolinate[c] '''=>''' 1 CO2[c] '''+''' 1 diphosphate[c] '''+''' 1 β-nicotinate D-ribonucleotide[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_141]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_12892]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_8723]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_140]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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== Pathways  ==
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* [[PWY-5316]], nicotine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5316 PWY-5316]
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** '''2''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-5653]], NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5653 PWY-5653]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PYRIDNUCSYN-PWY]], NAD biosynthesis I (from aspartate): [http://metacyc.org/META/NEW-IMAGE?object=PYRIDNUCSYN-PWY PYRIDNUCSYN-PWY]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7342]], superpathway of nicotine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7342 PWY-7342]
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** '''3''' reactions found over '''13''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=24970669 24970669]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12733 12733]
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* CHEBI:
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* LIGAND-RXN:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57823 57823]
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** [http://www.genome.jp/dbget-bin/www_bget?R03348 R03348]
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* BIGG : 4c2me
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* UNIPROT:
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/Q9JSX8 Q9JSX8]
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** [http://www.genome.jp/dbget-bin/www_bget?C11435 C11435]
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** [http://www.uniprot.org/uniprot/Q57916 Q57916]
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{{#set: smiles=CC(O)(CO)C(O)COP(OP([O-])(=O)OCC2(C(C(O)C(N1(C(N=C(C=C1)N)=O))O2)O))([O-])=O}}
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** [http://www.uniprot.org/uniprot/P30011 P30011]
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{{#set: inchi key=InChIKey=YFAUKWZNPVBCFF-XHIBXCGHSA-L}}
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** [http://www.uniprot.org/uniprot/P46714 P46714]
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{{#set: common name=4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol}}
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** [http://www.uniprot.org/uniprot/Q15274 Q15274]
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{{#set: molecular weight=519.295    }}
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** [http://www.uniprot.org/uniprot/P77938 P77938]
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{{#set: common name=CDP-ME|CDP-methyl-D-erythritol|4-diphosphocytidyl-2C-methyl-D-erythritol|4-diphosphocytidyl-2-C-methylerythritol}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: consumed by=2.7.1.148-RXN}}
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{{#set: common name=endo-_-beta-glucanase}}
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{{#set: produced by=2.7.7.60-RXN}}
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{{#set: common name=nicotinate-nucleotide_pyrophosphorylase}}
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{{#set: common name=phosphoglycolate_phosphatase}}
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{{#set: ec number=EC-2.4.2.19}}
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{{#set: gene associated=Tiso_gene_141|Tiso_gene_12892|Tiso_gene_8723|Tiso_gene_140}}
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{{#set: in pathway=PWY-5316|PWY-5653|PYRIDNUCSYN-PWY|PWY-7342}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|orthology-creinhardtii|orthology-synechocystis|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:16, 21 March 2018

Reaction QUINOPRIBOTRANS-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • endo-_-beta-glucanase
    • nicotinate-nucleotide_pyrophosphorylase
    • phosphoglycolate_phosphatase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5316, nicotine biosynthesis: PWY-5316
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-5653, NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde: PWY-5653
    • 3 reactions found over 4 reactions in the full pathway
  • PYRIDNUCSYN-PWY, NAD biosynthesis I (from aspartate): PYRIDNUCSYN-PWY
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7342, superpathway of nicotine biosynthesis: PWY-7342
    • 3 reactions found over 13 reactions in the full pathway

Reconstruction information

External links






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