Difference between revisions of "Tiso gene 1682"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9666 RXN-9666] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/3....")
(Created page with "Category:Gene == Gene Tiso_gene_1682 == * right end position: ** 11339 * transcription direction: ** POSITIVE * left end position: ** 9336 * centisome position: ** 29.8838...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9666 RXN-9666] ==
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== Gene Tiso_gene_1682 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 11339
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/3.1.2.2 EC-3.1.2.2]
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** POSITIVE
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* left end position:
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** 9336
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* centisome position:
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** 29.883808   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN0-2161]]
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** 1 [[OLEOYL-COA]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[OLEATE-CPD]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 oleoyl-CoA[c] '''+''' 1 H2O[c] '''=>''' 1 coenzyme A[c] '''+''' 1 H+[c] '''+''' 1 oleate[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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* Reaction: [[SERINE--TRNA-LIGASE-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_7477]]
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** [[pantograph]]-[[athaliana]]
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== Pathways  ==
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* [[PWY-321]], cutin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-321 PWY-321]
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** '''3''' reactions found over '''16''' reactions in the full pathway
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* [[PWY-6733]], sporopollenin precursors biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6733 PWY-6733]
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** '''8''' reactions found over '''18''' reactions in the full pathway
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* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
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** '''9''' reactions found over '''19''' reactions in the full pathway
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* [[PWY-5996]], oleate biosynthesis II (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5996 PWY-5996]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[TRNA-CHARGING-PWY]]
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* [[PWY0-901]]
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* [[PWY-6281]]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=11339}}
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** [http://www.genome.jp/dbget-bin/www_bget?R08176 R08176]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=9336}}
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{{#set: ec number=EC-3.1.2.2}}
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{{#set: centisome position=29.883808    }}
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{{#set: gene associated=Tiso_gene_7477}}
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{{#set: reaction associated=RXN0-2161|SERINE--TRNA-LIGASE-RXN}}
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{{#set: in pathway=PWY-321|PWY-6733|PWY-1121|PWY-5996}}
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{{#set: pathway associated=TRNA-CHARGING-PWY|PWY0-901|PWY-6281}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 21:16, 21 March 2018

Gene Tiso_gene_1682

  • right end position:
    • 11339
  • transcription direction:
    • POSITIVE
  • left end position:
    • 9336
  • centisome position:
    • 29.883808
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1682&oldid=47369"