Difference between revisions of "SPERMIDINESYN-RXN"
From metabolic_network
(Created page with "Category:Gene == Gene Tiso_gene_4596 == * left end position: ** 8128 * transcription direction: ** POSITIVE * right end position: ** 16593 * centisome position: ** 48.8109...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINESYN-RXN SPERMIDINESYN-RXN] == * direction: ** REVERSIBLE * common name: ** spermidine_syn...") |
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| − | [[Category: | + | [[Category:Reaction]] |
| − | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINESYN-RXN SPERMIDINESYN-RXN] == |
| − | * | + | * direction: |
| − | + | ** REVERSIBLE | |
| − | + | * common name: | |
| − | ** | + | ** spermidine_synthase |
| − | * | + | * ec number: |
| − | ** | + | ** [http://enzyme.expasy.org/EC/2.5.1.16 EC-2.5.1.16] |
| − | * | + | |
| − | ** | + | |
* Synonym(s): | * Synonym(s): | ||
| − | == | + | == Reaction Formula == |
| − | * [[ | + | * With identifiers: |
| − | ** [[ | + | ** 1 [[S-ADENOSYLMETHIONINAMINE]][c] '''+''' 1 [[PUTRESCINE]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[SPERMIDINE]][c] '''+''' 1 [[5-METHYLTHIOADENOSINE]][c] |
| − | * [[ | + | * With common name(s): |
| − | ** in-silico_annotation | + | ** 1 S-adenosyl 3-(methylthio)propylamine[c] '''+''' 1 putrescine[c] '''<=>''' 1 H+[c] '''+''' 1 spermidine[c] '''+''' 1 S-methyl-5'-thioadenosine[c] |
| − | *** | + | |
| − | * [[ | + | == Genes associated with this reaction == |
| − | ** [[ | + | Genes have been associated with this reaction based on different elements listed below. |
| − | * [[ | + | * Gene: [[Tiso_gene_17803]] |
| − | ** [[ | + | ** Source: [[annotation-in-silico_annotation]] |
| − | * [[ | + | *** Assignment: AUTOMATED-NAME-MATCH |
| − | ** [[ | + | ** Source: [[orthology-athaliana]] |
| − | * [[ | + | ** Source: [[orthology-esiliculosus]] |
| − | ** [[pantograph]] | + | ** Source: [[orthology-creinhardtii]] |
| − | + | * Gene: [[Tiso_gene_16717]] | |
| − | * [[ | + | ** Source: [[annotation-in-silico_annotation]] |
| − | * [[ | + | *** Assignment: AUTOMATED-NAME-MATCH |
| − | * [[ | + | * Gene: [[Tiso_gene_16718]] |
| − | * [[ | + | ** Source: [[annotation-in-silico_annotation]] |
| + | *** Assignment: AUTOMATED-NAME-MATCH | ||
| + | * Gene: [[Tiso_gene_17081]] | ||
| + | ** Source: [[orthology-esiliculosus]] | ||
| + | == Pathways == | ||
| + | * [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=BSUBPOLYAMSYN-PWY BSUBPOLYAMSYN-PWY] | ||
| + | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
| + | == Reconstruction information == | ||
| + | * Category: [[orthology]] | ||
| + | ** Source: [[orthology-athaliana]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-creinhardtii]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | ** Source: [[orthology-esiliculosus]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | * Category: [[annotation]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| − | {{#set: | + | * RHEA: |
| − | {{#set: | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12721 12721] |
| − | {{#set: | + | * LIGAND-RXN: |
| − | {{#set: | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01920 R01920] |
| − | {{#set: | + | * UNIPROT: |
| − | {{#set: | + | ** [http://www.uniprot.org/uniprot/P19623 P19623] |
| + | ** [http://www.uniprot.org/uniprot/Q57761 Q57761] | ||
| + | ** [http://www.uniprot.org/uniprot/Q12074 Q12074] | ||
| + | ** [http://www.uniprot.org/uniprot/Q12455 Q12455] | ||
| + | ** [http://www.uniprot.org/uniprot/P09158 P09158] | ||
| + | ** [http://www.uniprot.org/uniprot/O48660 O48660] | ||
| + | {{#set: direction=REVERSIBLE}} | ||
| + | {{#set: common name=spermidine_synthase}} | ||
| + | {{#set: ec number=EC-2.5.1.16}} | ||
| + | {{#set: gene associated=Tiso_gene_17803|Tiso_gene_16717|Tiso_gene_16718|Tiso_gene_17081}} | ||
| + | {{#set: in pathway=BSUBPOLYAMSYN-PWY}} | ||
| + | {{#set: reconstruction category=orthology|annotation}} | ||
| + | {{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|orthology-creinhardtii|orthology-esiliculosus}} | ||
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 21:16, 21 March 2018
Contents
Reaction SPERMIDINESYN-RXN
- direction:
- REVERSIBLE
- common name:
- spermidine_synthase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 S-ADENOSYLMETHIONINAMINE[c] + 1 PUTRESCINE[c] <=> 1 PROTON[c] + 1 SPERMIDINE[c] + 1 5-METHYLTHIOADENOSINE[c]
- With common name(s):
- 1 S-adenosyl 3-(methylthio)propylamine[c] + 1 putrescine[c] <=> 1 H+[c] + 1 spermidine[c] + 1 S-methyl-5'-thioadenosine[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_17803
- Source: annotation-in-silico_annotation
- Assignment: AUTOMATED-NAME-MATCH
- Source: orthology-athaliana
- Source: orthology-esiliculosus
- Source: orthology-creinhardtii
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_16717
- Source: annotation-in-silico_annotation
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_16718
- Source: annotation-in-silico_annotation
- Assignment: AUTOMATED-NAME-MATCH
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_17081
- Source: orthology-esiliculosus
Pathways
- BSUBPOLYAMSYN-PWY, spermidine biosynthesis I: BSUBPOLYAMSYN-PWY
- 2 reactions found over 2 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-athaliana
- Tool: pantograph
- Source: orthology-creinhardtii
- Tool: pantograph
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-athaliana
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links
