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| − | [[Category:Reaction]] | + | [[Category:Metabolite]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLYCDEHYDROG-RXN PGLYCDEHYDROG-RXN] == | + | == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=3-Hydroxyglutaryl-ACP-methyl-ester 3-Hydroxyglutaryl-ACP-methyl-ester] == |
| − | * direction:
| + | |
| − | ** REVERSIBLE
| + | |
| | * common name: | | * common name: |
| − | ** d-3-phosphoglycerate_dehydrogenase | + | ** a (3R)-3-hydroxyglutaryl-[acp] methyl ester |
| − | ** ORF
| + | |
| − | * ec number:
| + | |
| − | ** [http://enzyme.expasy.org/EC/1.1.1.95 EC-1.1.1.95]
| + | |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction Formula == | + | == Reaction(s) known to consume the compound == |
| − | * With identifiers:
| + | * [[RXN-11477]] |
| − | ** 1 [[G3P]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[3-P-HYDROXYPYRUVATE]][c] '''+''' 1 [[NADH]][c]
| + | == Reaction(s) known to produce the compound == |
| − | * With common name(s):
| + | * [[RXN-11476]] |
| − | ** 1 3-phospho-D-glycerate[c] '''+''' 1 NAD+[c] '''<=>''' 1 H+[c] '''+''' 1 3-phospho-hydroxypyruvate[c] '''+''' 1 NADH[c]
| + | == Reaction(s) of unknown directionality == |
| − | | + | |
| − | == Genes associated with this reaction == | + | |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | |
| − | * Gene: [[Tiso_gene_6223]] | + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | * Gene: [[Tiso_gene_6224]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | * Gene: [[Tiso_gene_17123]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | * Gene: [[Tiso_gene_15687]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Assignment: EC-NUMBER
| + | |
| − | ** Source: [[orthology-athaliana]]
| + | |
| − | ** Source: [[orthology-synechocystis]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | ** Source: [[orthology-creinhardtii]]
| + | |
| − | * Gene: [[Tiso_gene_15686]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | * Gene: [[Tiso_gene_18904]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Assignment: AUTOMATED-NAME-MATCH
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | == Pathways == | + | |
| − | * [[SERSYN-PWY]], L-serine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SERSYN-PWY SERSYN-PWY] | + | |
| − | ** '''3''' reactions found over '''3''' reactions in the full pathway
| + | |
| − | == Reconstruction information == | + | |
| − | * Category: [[orthology]]
| + | |
| − | ** Source: [[orthology-athaliana]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | ** Source: [[orthology-creinhardtii]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | ** Source: [[orthology-synechocystis]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | * Category: [[manual]]
| + | |
| − | ** Source: [[manual-primary_network]]
| + | |
| − | * Category: [[annotation]]
| + | |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Tool: [[pathwaytools]]
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Tool: [[pathwaytools]]
| + | |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: common name=a (3R)-3-hydroxyglutaryl-[acp] methyl ester}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12641 12641]
| + | {{#set: consumed by=RXN-11477}} |
| − | * LIGAND-RXN:
| + | {{#set: produced by=RXN-11476}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R01513 R01513]
| + | |
| − | * UNIPROT:
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q58424 Q58424]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P43885 P43885]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P35136 P35136]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9PP40 Q9PP40]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P0A9T0 P0A9T0]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P40510 P40510]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P40054 P40054]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O49485 O49485]
| + | |
| − | ** [http://www.uniprot.org/uniprot/P87228 P87228]
| + | |
| − | ** [http://www.uniprot.org/uniprot/O04130 O04130]
| + | |
| − | {{#set: direction=REVERSIBLE}}
| + | |
| − | {{#set: common name=d-3-phosphoglycerate_dehydrogenase}} | + | |
| − | {{#set: common name=ORF}}
| + | |
| − | {{#set: ec number=EC-1.1.1.95}}
| + | |
| − | {{#set: gene associated=Tiso_gene_6223|Tiso_gene_6224|Tiso_gene_17123|Tiso_gene_15687|Tiso_gene_15686|Tiso_gene_18904}} | + | |
| − | {{#set: in pathway=SERSYN-PWY}}
| + | |
| − | {{#set: reconstruction category=orthology|manual|annotation}} | + | |
| − | {{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
| + | |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}}
| + | |
