Difference between revisions of "Tiso gene 7322"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12565 RXN-12565] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-ketoacyl-_thiolase ** ace...")
(Created page with "Category:Gene == Gene Tiso_gene_7322 == * right end position: ** 9289 * transcription direction: ** POSITIVE * left end position: ** 7319 * centisome position: ** 64.82154...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12565 RXN-12565] ==
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== Gene Tiso_gene_7322 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 9289
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* common name:
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* transcription direction:
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** 3-ketoacyl-_thiolase
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** POSITIVE
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** acetyl-_c-acetyltransferase
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* left end position:
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** thiolase
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** 7319
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
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** 64.82154   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ALDEHYDE-DEHYDROGENASE-NADORNOP+-RXN]]
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** 1 [[BUTYRYL-COA]][c] '''+''' 1 [[ACETYL-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[K-HEXANOYL-COA]][c]
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* With common name(s):
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** 1 butanoyl-CoA[c] '''+''' 1 acetyl-CoA[c] '''=>''' 1 coenzyme A[c] '''+''' 1 3-oxohexanoyl-CoA[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_3856]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** Assignment: ec-number
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* Gene: [[Tiso_gene_3855]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* Reaction: [[ALDEHYDE-DEHYDROGENASE-NADP+-RXN]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
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* Reaction: [[ALDHDEHYDROG-RXN]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_17451]]
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−
** Source: [[annotation-in-silico_annotation]]
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−
*** Assignment: EC-NUMBER
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−
** Source: [[annotation-experimental_annotation]]
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−
*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_15327]]
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−
** Source: [[annotation-experimental_annotation]]
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−
*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
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* Reaction: [[GLYCERALDEHYDE-DEHYDRO-RXN]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[GLYCOLALD-DEHYDROG-RXN]]
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* Gene: [[Tiso_gene_10116]]
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** Source: [[orthology-synechocystis]]
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** Source: [[annotation-in-silico_annotation]]
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* Reaction: [[R01752]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-synechocystis]]
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** Source: [[annotation-experimental_annotation]]
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* Reaction: [[RXN-10089]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_16181]]
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** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[RXN-10715]]
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** Source: [[orthology-creinhardtii]]
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== Pathways  ==
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* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
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** '''5''' reactions found over '''11''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
 
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** Source: [[orthology-creinhardtii]]
 
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*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Reaction: [[RXN-10780]]
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* Category: [[annotation]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-12332]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-14209]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-14224]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-14225]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-14280]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-37]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-5581]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pathwaytools]]
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* Reaction: [[RXN-6002]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-6382]]
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** Source: [[orthology-athaliana]]
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* Reaction: [[RXN-9844]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN66-3]]
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** Source: [[orthology-synechocystis]]
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== Pathways associated ==
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* [[PWY-6061]]
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* [[PWY-3641]]
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* [[PWY66-161]]
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* [[PWY66-21]]
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* [[NPGLUCAT-PWY]]
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* [[PWY-3981]]
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* [[PWY66-162]]
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* [[PWY-7269]]
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* [[PWY-0]]
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* [[PWY-7387]]
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* [[PWY0-1280]]
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* [[PWY-5760]]
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* [[PWY-6181]]
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* [[PWY-6307]]
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* [[PWY-6313]]
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* [[PWY-3162]]
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* [[DARABCATK12-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=9289}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31113 31113]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=7319}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01177 R01177]
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{{#set: centisome position=64.82154    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=ALDEHYDE-DEHYDROGENASE-NADORNOP+-RXN|ALDEHYDE-DEHYDROGENASE-NADP+-RXN|ALDHDEHYDROG-RXN|GLYCERALDEHYDE-DEHYDRO-RXN|GLYCOLALD-DEHYDROG-RXN|R01752|RXN-10089|RXN-10715|RXN-10780|RXN-12332|RXN-14209|RXN-14224|RXN-14225|RXN-14280|RXN-37|RXN-5581|RXN-6002|RXN-6382|RXN-9844|RXN66-3}}
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{{#set: common name=3-ketoacyl-_thiolase}}
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{{#set: pathway associated=PWY-6061|PWY-3641|PWY66-161|PWY66-21|NPGLUCAT-PWY|PWY-3981|PWY66-162|PWY-7269|PWY-0|PWY-7387|PWY0-1280|PWY-5760|PWY-6181|PWY-6307|PWY-6313|PWY-3162|DARABCATK12-PWY}}
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{{#set: common name=acetyl-_c-acetyltransferase}}
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{{#set: common name=thiolase}}
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{{#set: ec number=EC-2.3.1.16}}
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{{#set: gene associated=Tiso_gene_3856|Tiso_gene_3855|Tiso_gene_17451|Tiso_gene_15327|Tiso_gene_10116|Tiso_gene_16181}}
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{{#set: in pathway=PWY-6863}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|annotation-in-silico_annotation|orthology-athaliana|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 21:18, 21 March 2018

Gene Tiso_gene_7322

  • right end position:
    • 9289
  • transcription direction:
    • POSITIVE
  • left end position:
    • 7319
  • centisome position:
    • 64.82154
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_7322&oldid=47613"