Difference between revisions of "RXN-12565"

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(Created page with "Category:Gene == Gene Tiso_gene_7495 == * left end position: ** 7623 * transcription direction: ** POSITIVE * right end position: ** 9984 * centisome position: ** 68.65712...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12565 RXN-12565] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-ketoacyl-_thiolase ** ace...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_7495 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12565 RXN-12565] ==
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* left end position:
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* direction:
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** 7623
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** 3-ketoacyl-_thiolase
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* right end position:
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** acetyl-_c-acetyltransferase
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** 9984
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** thiolase
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* centisome position:
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* ec number:
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** 68.65712   
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** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[ASNSYNA-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[BUTYRYL-COA]][c] '''+''' 1 [[ACETYL-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[K-HEXANOYL-COA]][c]
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***ec-number
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* With common name(s):
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** [[pantograph]]-[[esiliculosus]]
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** 1 butanoyl-CoA[c] '''+''' 1 acetyl-CoA[c] '''=>''' 1 coenzyme A[c] '''+''' 1 3-oxohexanoyl-CoA[c]
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* [[ASNSYNB-RXN]]
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** in-silico_annotation
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== Genes associated with this reaction  ==
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***ec-number
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Genes have been associated with this reaction based on different elements listed below.
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** [[pantograph]]-[[esiliculosus]]
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* Gene: [[Tiso_gene_3856]]
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* [[GLUTAMIN-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** in-silico_annotation
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*** Assignment: EC-NUMBER
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***ec-number
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* Gene: [[Tiso_gene_3855]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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== Pathways associated ==
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*** Assignment: EC-NUMBER
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* [[ASPARAGINE-BIOSYNTHESIS]]
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** Source: [[annotation-experimental_annotation]]
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* [[ASPARAGINESYN-PWY]]
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*** Assignment: EC-NUMBER
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* [[GLUTAMINDEG-PWY]]
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* Gene: [[Tiso_gene_17451]]
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* [[CITRULBIO-PWY]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_15327]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_10116]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_16181]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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** Source: [[orthology-creinhardtii]]
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== Pathways ==
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* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
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** '''5''' reactions found over '''11''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=7623}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31113 31113]
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{{#set: right end position=9984}}
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* LIGAND-RXN:
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{{#set: centisome position=68.65712    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R01177 R01177]
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{{#set: reaction associated=ASNSYNA-RXN|ASNSYNB-RXN|GLUTAMIN-RXN}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: pathway associated=ASPARAGINE-BIOSYNTHESIS|ASPARAGINESYN-PWY|GLUTAMINDEG-PWY|CITRULBIO-PWY}}
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{{#set: common name=3-ketoacyl-_thiolase}}
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{{#set: common name=acetyl-_c-acetyltransferase}}
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{{#set: common name=thiolase}}
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{{#set: ec number=EC-2.3.1.16}}
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{{#set: gene associated=Tiso_gene_3856|Tiso_gene_3855|Tiso_gene_17451|Tiso_gene_15327|Tiso_gene_10116|Tiso_gene_16181}}
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{{#set: in pathway=PWY-6863}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|annotation-in-silico_annotation|orthology-athaliana|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:18, 21 March 2018

Reaction RXN-12565

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-ketoacyl-_thiolase
    • acetyl-_c-acetyltransferase
    • thiolase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6863, pyruvate fermentation to hexanol (engineered): PWY-6863
    • 5 reactions found over 11 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12565&oldid=47627"