Difference between revisions of "GDP-L-GALACTOSE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALONYL-COA-ACP-TRANSACYL-RXN MALONYL-COA-ACP-TRANSACYL-RXN] == * direction: ** LEFT-TO-RIGHT * com...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GDP-L-GALACTOSE GDP-L-GALACTOSE] == * smiles: ** C(C3(C(C(C(N2(C1(=C(C(NC(=N1)N)=O)N=C2)))O3)O)...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALONYL-COA-ACP-TRANSACYL-RXN MALONYL-COA-ACP-TRANSACYL-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GDP-L-GALACTOSE GDP-L-GALACTOSE] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C(C3(C(C(C(N2(C1(=C(C(NC(=N1)N)=O)N=C2)))O3)O)O))OP(OP(OC4(C(C(C(C(O4)CO)O)O)O))([O-])=O)([O-])=O
 
* common name:
 
* common name:
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** polyketide_synthase
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** GDP-β-L-galactose
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** malonyl-_:acp_transacylase
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* inchi key:
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* ec number:
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** InChIKey=MVMSCBBUIHUTGJ-JGQUBWHWSA-L
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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* molecular weight:
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** 603.329   
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** [http://enzyme.expasy.org/EC/2.3.1.39 EC-2.3.1.39]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[ACP]][c] '''+''' 1 [[MALONYL-COA]][c] '''=>''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[CO-A]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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* [[RXN-7772]]
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** 1 a holo-[acyl-carrier protein][c] '''+''' 1 malonyl-CoA[c] '''=>''' 1 a malonyl-[acp][c] '''+''' 1 coenzyme A[c]
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* [[RXN-1882]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_135]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_500]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_19309]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_136]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_18460]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[synechocystis]]
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== Pathways  ==
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* [[PWY-6799]], fatty acid biosynthesis (plant mitochondria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6799 PWY-6799]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-4381]], fatty acid biosynthesis initiation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4381 PWY-4381]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[synechocystis]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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* PUBCHEM:
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** [http://www.genome.jp/dbget-bin/www_bget?R01626 R01626]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25200538 25200538]
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* UNIPROT:
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P72391 P72391]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=61454 61454]
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** [http://www.uniprot.org/uniprot/P49327 P49327]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/O34825 O34825]
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** [http://www.genome.jp/dbget-bin/www_bget?C02280 C02280]
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** [http://www.uniprot.org/uniprot/Q9RT24 Q9RT24]
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{{#set: smiles=C(C3(C(C(C(N2(C1(=C(C(NC(=N1)N)=O)N=C2)))O3)O)O))OP(OP(OC4(C(C(C(C(O4)CO)O)O)O))([O-])=O)([O-])=O}}
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** [http://www.uniprot.org/uniprot/Q9JW58 Q9JW58]
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{{#set: common name=GDP-β-L-galactose}}
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** [http://www.uniprot.org/uniprot/P0AAI9 P0AAI9]
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{{#set: inchi key=InChIKey=MVMSCBBUIHUTGJ-JGQUBWHWSA-L}}
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** [http://www.uniprot.org/uniprot/O24916 O24916]
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{{#set: molecular weight=603.329    }}
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** [http://www.uniprot.org/uniprot/Q9JXR4 Q9JXR4]
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{{#set: reversible reaction associated=RXN-7772|RXN-1882}}
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** [http://www.uniprot.org/uniprot/Q9ZCJ6 Q9ZCJ6]
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** [http://www.uniprot.org/uniprot/Q9YBK5 Q9YBK5]
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** [http://www.uniprot.org/uniprot/Q9PJ11 Q9PJ11]
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** [http://www.uniprot.org/uniprot/P43712 P43712]
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** [http://www.uniprot.org/uniprot/Q9Z8P1 Q9Z8P1]
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** [http://www.uniprot.org/uniprot/O67041 O67041]
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** [http://www.uniprot.org/uniprot/Q9ZMY1 Q9ZMY1]
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** [http://www.uniprot.org/uniprot/Q9PKF6 Q9PKF6]
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** [http://www.uniprot.org/uniprot/P63458 P63458]
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** [http://www.uniprot.org/uniprot/O84241 O84241]
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** [http://www.uniprot.org/uniprot/Q9WZQ5 Q9WZQ5]
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** [http://www.uniprot.org/uniprot/P71019 P71019]
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** [http://www.uniprot.org/uniprot/P07149 P07149]
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** [http://www.uniprot.org/uniprot/P73242 P73242]
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** [http://www.uniprot.org/uniprot/Q8RU07 Q8RU07]
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** [http://www.uniprot.org/uniprot/Q54205 Q54205]
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** [http://www.uniprot.org/uniprot/O54437 O54437]
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** [http://www.uniprot.org/uniprot/Q56692 Q56692]
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** [http://www.uniprot.org/uniprot/O13698 O13698]
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** [http://www.uniprot.org/uniprot/Q9RA34 Q9RA34]
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** [http://www.uniprot.org/uniprot/O69476 O69476]
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** [http://www.uniprot.org/uniprot/P12276 P12276]
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** [http://www.uniprot.org/uniprot/P12785 P12785]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=polyketide_synthase}}
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{{#set: common name=malonyl-_:acp_transacylase}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: ec number=EC-2.3.1.39}}
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{{#set: gene associated=Tiso_gene_135|Tiso_gene_500|Tiso_gene_10876|Tiso_gene_13394|Tiso_gene_19309|Tiso_gene_136|Tiso_gene_18460}}
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{{#set: in pathway=PWY-6799|PWY-7388|PWY-4381}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 21:18, 21 March 2018

Metabolite GDP-L-GALACTOSE

  • smiles:
    • C(C3(C(C(C(N2(C1(=C(C(NC(=N1)N)=O)N=C2)))O3)O)O))OP(OP(OC4(C(C(C(C(O4)CO)O)O)O))([O-])=O)([O-])=O
  • common name:
    • GDP-β-L-galactose
  • inchi key:
    • InChIKey=MVMSCBBUIHUTGJ-JGQUBWHWSA-L
  • molecular weight:
    • 603.329
  • Synonym(s):

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"C(C3(C(C(C(N2(C1(=C(C(NC(=N1)N)=O)N=C2)))O3)O)O))OP(OP(OC4(C(C(C(C(O4)CO)O)O)O))([O-])=O)([O-])=O" cannot be used as a page name in this wiki.



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