Difference between revisions of "RXN-15684"

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(Created page with "Category:Gene == Gene Tiso_gene_13939 == * left end position: ** 66 * transcription direction: ** NEGATIVE * right end position: ** 3482 * centisome position: ** 1.1096166...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15684 RXN-15684] == * direction: ** LEFT-TO-RIGHT * common name: ** FAD-dependent 3-benzyl-3,6...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_13939 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15684 RXN-15684] ==
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* left end position:
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* direction:
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** 66
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** FAD-dependent 3-benzyl-3,6 -dithio-6-(hydroxymethyl)-diketopiperazine dithiol oxidase
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* right end position:
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** sulfhydryl_oxidase
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** 3482
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** sulfhydryl_oxidase_1
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* centisome position:
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* ec number:
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** 1.1096166   
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** [http://enzyme.expasy.org/EC/1.8.3.2 EC-1.8.3.2]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[PABASYN-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[CPD-17049]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[CPD-17050]][c]
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***automated-name-match
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* With common name(s):
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** [[pantograph]]-[[athaliana]]
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** 1 3-benzyl-3,6 -dithio-6-(hydroxymethyl)-diketopiperazine[c] '''+''' 1 oxygen[c] '''=>''' 1 hydrogen peroxide[c] '''+''' 1 3-benzyl-3,6 -disulfide-6-(hydroxymethyl)-diketopiperazine[c]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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== Genes associated with this reaction  ==
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== Pathways associated ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[PWY-6543]]
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* Gene: [[Tiso_gene_13846]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_17069]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_16192]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_20164]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_7321]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_9472]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_20163]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_12069]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_8416]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_3314]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_13847]]
 +
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_4530]]
 +
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_12454]]
 +
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
 +
== Pathways ==
 +
* [[PWY-7533]], gliotoxin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7533 PWY-7533]
 +
** '''2''' reactions found over '''9''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=66}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=FAD-dependent 3-benzyl-3,6 -dithio-6-(hydroxymethyl)-diketopiperazine dithiol oxidase}}
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{{#set: right end position=3482}}
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{{#set: common name=sulfhydryl_oxidase}}
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{{#set: centisome position=1.1096166    }}
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{{#set: common name=sulfhydryl_oxidase_1}}
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{{#set: reaction associated=PABASYN-RXN}}
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{{#set: ec number=EC-1.8.3.2}}
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{{#set: pathway associated=PWY-6543}}
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{{#set: gene associated=Tiso_gene_13846|Tiso_gene_17069|Tiso_gene_16192|Tiso_gene_20164|Tiso_gene_7321|Tiso_gene_9472|Tiso_gene_20163|Tiso_gene_12069|Tiso_gene_8416|Tiso_gene_3314|Tiso_gene_13847|Tiso_gene_4530|Tiso_gene_12454}}
 +
{{#set: in pathway=PWY-7533}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:18, 21 March 2018

Reaction RXN-15684

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • FAD-dependent 3-benzyl-3,6 -dithio-6-(hydroxymethyl)-diketopiperazine dithiol oxidase
    • sulfhydryl_oxidase
    • sulfhydryl_oxidase_1
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3-benzyl-3,6 -dithio-6-(hydroxymethyl)-diketopiperazine[c] + 1 oxygen[c] => 1 hydrogen peroxide[c] + 1 3-benzyl-3,6 -disulfide-6-(hydroxymethyl)-diketopiperazine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7533, gliotoxin biosynthesis: PWY-7533
    • 2 reactions found over 9 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-15684&oldid=47694"