Difference between revisions of "RXN-15684"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXKIN-RXN PYRIDOXKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** pyridoxal_kinase...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15684 RXN-15684] == * direction: ** LEFT-TO-RIGHT * common name: ** FAD-dependent 3-benzyl-3,6...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXKIN-RXN PYRIDOXKIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15684 RXN-15684] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** pyridoxal_kinase
+
** FAD-dependent 3-benzyl-3,6 -dithio-6-(hydroxymethyl)-diketopiperazine dithiol oxidase
 +
** sulfhydryl_oxidase
 +
** sulfhydryl_oxidase_1
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.1.35 EC-2.7.1.35]
+
** [http://enzyme.expasy.org/EC/1.8.3.2 EC-1.8.3.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PYRIDOXAL]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PYRIDOXAL_PHOSPHATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c]
+
** 1 [[CPD-17049]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[CPD-17050]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 pyridoxal[c] '''+''' 1 ATP[c] '''=>''' 1 pyridoxal 5'-phosphate[c] '''+''' 1 H+[c] '''+''' 1 ADP[c]
+
** 1 3-benzyl-3,6 -dithio-6-(hydroxymethyl)-diketopiperazine[c] '''+''' 1 oxygen[c] '''=>''' 1 hydrogen peroxide[c] '''+''' 1 3-benzyl-3,6 -disulfide-6-(hydroxymethyl)-diketopiperazine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_6106]]
+
* Gene: [[Tiso_gene_13846]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17069]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: AUTOMATED-NAME-MATCH
 
*** Assignment: AUTOMATED-NAME-MATCH
−
** Source: [[orthology-athaliana]]
+
* Gene: [[Tiso_gene_16192]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_20164]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_7321]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_9472]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_20163]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_12069]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
−
** Source: [[orthology-creinhardtii]]
+
* Gene: [[Tiso_gene_8416]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_3314]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_13847]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_4530]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_12454]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204]
+
* [[PWY-7533]], gliotoxin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7533 PWY-7533]
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''2''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I: [http://metacyc.org/META/NEW-IMAGE?object=PLPSAL-PWY PLPSAL-PWY]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
Line 42: Line 72:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10224 10224]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00174 R00174]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q7M2L1 Q7M2L1]
 
−
** [http://www.uniprot.org/uniprot/P44690 P44690]
 
−
** [http://www.uniprot.org/uniprot/P77150 P77150]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=pyridoxal_kinase}}
+
{{#set: common name=FAD-dependent 3-benzyl-3,6 -dithio-6-(hydroxymethyl)-diketopiperazine dithiol oxidase}}
−
{{#set: ec number=EC-2.7.1.35}}
+
{{#set: common name=sulfhydryl_oxidase}}
−
{{#set: gene associated=Tiso_gene_6106}}
+
{{#set: common name=sulfhydryl_oxidase_1}}
−
{{#set: in pathway=PWY-7204|PWY-7282|PLPSAL-PWY}}
+
{{#set: ec number=EC-1.8.3.2}}
 +
{{#set: gene associated=Tiso_gene_13846|Tiso_gene_17069|Tiso_gene_16192|Tiso_gene_20164|Tiso_gene_7321|Tiso_gene_9472|Tiso_gene_20163|Tiso_gene_12069|Tiso_gene_8416|Tiso_gene_3314|Tiso_gene_13847|Tiso_gene_4530|Tiso_gene_12454}}
 +
{{#set: in pathway=PWY-7533}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|orthology-creinhardtii|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:18, 21 March 2018

Reaction RXN-15684

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • FAD-dependent 3-benzyl-3,6 -dithio-6-(hydroxymethyl)-diketopiperazine dithiol oxidase
    • sulfhydryl_oxidase
    • sulfhydryl_oxidase_1
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 3-benzyl-3,6 -dithio-6-(hydroxymethyl)-diketopiperazine[c] + 1 oxygen[c] => 1 hydrogen peroxide[c] + 1 3-benzyl-3,6 -disulfide-6-(hydroxymethyl)-diketopiperazine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7533, gliotoxin biosynthesis: PWY-7533
    • 2 reactions found over 9 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-15684&oldid=47694"