Difference between revisions of "Tiso gene 9396"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPHINGANINE-1-PHOSPHATE-ALDOLASE-RXN SPHINGANINE-1-PHOSPHATE-ALDOLASE-RXN] == * direction: ** LEFT-...")
(Created page with "Category:Gene == Gene Tiso_gene_9396 == * right end position: ** 6539 * transcription direction: ** POSITIVE * left end position: ** 5127 * centisome position: ** 39.85231...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPHINGANINE-1-PHOSPHATE-ALDOLASE-RXN SPHINGANINE-1-PHOSPHATE-ALDOLASE-RXN] ==
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== Gene Tiso_gene_9396 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 6539
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* common name:
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* transcription direction:
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** sphinganine1-phosphate_aldolase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/4.1.2.27 EC-4.1.2.27]
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** 5127
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* centisome position:
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** 39.852314   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ADENOSINE-NUCLEOSIDASE-RXN]]
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** 1 [[CPD-649]][c] '''=>''' 1 [[PHOSPHORYL-ETHANOLAMINE]][c] '''+''' 1 [[PALMITALDEHYDE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 sphinganine 1-phosphate[c] '''=>''' 1 O-phosphoethanolamine[c] '''+''' 1 palmitaldehyde[c]
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* Reaction: [[INOSINE-NUCLEOSIDASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_105]]
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* Reaction: [[RXN0-361]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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*** Assignment: ec-number
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** Source: [[orthology-athaliana]]
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* Reaction: [[URIDINE-NUCLEOSIDASE-RXN]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY-7119]], sphingolipid recycling and degradation (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7119 PWY-7119]
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** '''5''' reactions found over '''11''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[orthology-creinhardtii]]
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== Pathways associated ==
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* [[PWY-6596]]
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* [[PWY-6605]]
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* [[PWY-6556]]
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* [[PWY-7195]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=6539}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18594 18594]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=5127}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02464 R02464]
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{{#set: centisome position=39.852314    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=ADENOSINE-NUCLEOSIDASE-RXN|INOSINE-NUCLEOSIDASE-RXN|RXN0-361|URIDINE-NUCLEOSIDASE-RXN}}
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{{#set: common name=sphinganine1-phosphate_aldolase}}
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{{#set: pathway associated=PWY-6596|PWY-6605|PWY-6556|PWY-7195}}
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{{#set: ec number=EC-4.1.2.27}}
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{{#set: gene associated=Tiso_gene_105}}
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{{#set: in pathway=PWY-7119}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:20, 21 March 2018

Gene Tiso_gene_9396

  • right end position:
    • 6539
  • transcription direction:
    • POSITIVE
  • left end position:
    • 5127
  • centisome position:
    • 39.852314
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_9396&oldid=47877"