Difference between revisions of "RXN-11474"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROKAEMPFEROL-4-REDUCTASE-RXN DIHYDROKAEMPFEROL-4-REDUCTASE-RXN] == * direction: ** LEFT-TO-RIG...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11474 RXN-11474] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-glutaryl-[acp] methyl...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROKAEMPFEROL-4-REDUCTASE-RXN DIHYDROKAEMPFEROL-4-REDUCTASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11474 RXN-11474] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** dihydroflavonol-4-reductase
+
** 3-oxo-glutaryl-[acp] methyl ester synthase
 +
** 3-oxoacyl-synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.219 EC-1.1.1.219]
+
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NADPH]][c] '''+''' 1 [[DIHYDROKAEMPFEROL-CMPD]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[LEUCOPELARGONIDIN-CMPD]][c] '''+''' 1 [[NADP]][c]
+
** 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Malonyl-acp-methyl-ester]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[3-Ketoglutaryl-ACP-methyl-ester]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NADPH[c] '''+''' 1 (+)-dihydrokaempferol[c] '''+''' 1 H+[c] '''=>''' 1 (2R,3S,4S)-leucopelargonidin[c] '''+''' 1 NADP+[c]
+
** 1 a malonyl-[acp][c] '''+''' 1 H+[c] '''+''' 1 a malonyl-[acp] methyl ester[c] '''=>''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 CO2[c] '''+''' 1 a 3-oxo-glutaryl-[acp] methyl ester[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_15272]]
+
* Gene: [[Tiso_gene_15991]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_9504]]
+
* Gene: [[Tiso_gene_19302]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***AUTOMATED-NAME-MATCH
+
* Gene: [[Tiso_gene_14485]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_9503]]
+
* Gene: [[Tiso_gene_5939]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_11016]]
+
** Source: [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[athaliana]]
+
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY1F-823]], leucopelargonidin and leucocyanidin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-823 PWY1F-823]
+
* [[PWY-6519]], 8-amino-7-oxononanoate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6519 PWY-6519]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''9''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23019 23019]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03123 R03123]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P51102 P51102]
 
−
** [http://www.uniprot.org/uniprot/P14720 P14720]
 
−
** [http://www.uniprot.org/uniprot/P14721 P14721]
 
−
** [http://www.uniprot.org/uniprot/P51106 P51106]
 
−
** [http://www.uniprot.org/uniprot/P51105 P51105]
 
−
** [http://www.uniprot.org/uniprot/P51107 P51107]
 
−
** [http://www.uniprot.org/uniprot/P73212 P73212]
 
−
** [http://www.uniprot.org/uniprot/O82105 O82105]
 
−
** [http://www.uniprot.org/uniprot/Q9SAN4 Q9SAN4]
 
−
** [http://www.uniprot.org/uniprot/P93776 P93776]
 
−
** [http://www.uniprot.org/uniprot/P93777 P93777]
 
−
** [http://www.uniprot.org/uniprot/P94105 P94105]
 
−
** [http://www.uniprot.org/uniprot/O22589 O22589]
 
−
** [http://www.uniprot.org/uniprot/O22605 O22605]
 
−
** [http://www.uniprot.org/uniprot/P51104 P51104]
 
−
** [http://www.uniprot.org/uniprot/Q9ZNV0 Q9ZNV0]
 
−
** [http://www.uniprot.org/uniprot/Q9SAY2 Q9SAY2]
 
−
** [http://www.uniprot.org/uniprot/P93840 P93840]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=dihydroflavonol-4-reductase}}
+
{{#set: common name=3-oxo-glutaryl-[acp] methyl ester synthase}}
−
{{#set: ec number=EC-1.1.1.219}}
+
{{#set: common name=3-oxoacyl-synthase}}
−
{{#set: gene associated=Tiso_gene_15272|Tiso_gene_9504|Tiso_gene_9503|Tiso_gene_11016}}
+
{{#set: ec number=EC-2.3.1.41}}
−
{{#set: in pathway=PWY1F-823}}
+
{{#set: gene associated=Tiso_gene_15991|Tiso_gene_19302|Tiso_gene_14485|Tiso_gene_5939}}
 +
{{#set: in pathway=PWY-6519}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:21, 21 March 2018

Reaction RXN-11474

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-oxo-glutaryl-[acp] methyl ester synthase
    • 3-oxoacyl-synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6519, 8-amino-7-oxononanoate biosynthesis I: PWY-6519
    • 9 reactions found over 11 reactions in the full pathway

Reconstruction information

External links

"3-oxo-glutaryl-[acp] methyl ester synthase" cannot be used as a page name in this wiki.




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