Difference between revisions of "Tiso gene 9114"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1106 RXN-1106] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1....")
(Created page with "Category:Gene == Gene Tiso_gene_9114 == * right end position: ** 2672 * transcription direction: ** POSITIVE * left end position: ** 393 * centisome position: ** 4.0920453...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1106 RXN-1106] ==
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== Gene Tiso_gene_9114 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 2672
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/1.2.1.44 EC-1.2.1.44]
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** POSITIVE
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* left end position:
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** 393
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* centisome position:
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** 4.0920453   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ATPASE-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[FERULOYL-COA]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CONIFERYL-ALDEHYDE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 feruloyl-CoA[c] '''=>''' 1 NADP+[c] '''+''' 1 coenzyme A[c] '''+''' 1 coniferaldehyde[c]
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* Reaction: [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-12195]]
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* [[Tiso_gene_15272]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: ec-number
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* [[Tiso_gene_11016]]
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* Reaction: [[RXN-12196]]
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** [[pantograph]]-[[athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_9504]]
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*** Assignment: ec-number
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[RXN0-5462]]
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== Pathways  ==
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-6027]], capsiconiate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6027 PWY-6027]
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*** Assignment: ec-number
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** '''1''' reactions found over '''4''' reactions in the full pathway
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== Pathways associated ==
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* [[PWY-361]], phenylpropanoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-361 PWY-361]
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* [[PWY-7184]]
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** '''7''' reactions found over '''15''' reactions in the full pathway
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* [[PWY-7198]]
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== Reconstruction information  ==
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* [[PWY-6545]]
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* Category: [[orthology]]
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* [[PWY-7210]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=2672}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02193 R02193]
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{{#set: transcription direction=POSITIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=393}}
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{{#set: ec number=EC-1.2.1.44}}
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{{#set: centisome position=4.0920453    }}
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{{#set: gene associated=Tiso_gene_15272|Tiso_gene_11016|Tiso_gene_9504}}
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{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
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{{#set: in pathway=PWY-6027|PWY-361}}
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}
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Latest revision as of 21:21, 21 March 2018

Gene Tiso_gene_9114

  • right end position:
    • 2672
  • transcription direction:
    • POSITIVE
  • left end position:
    • 393
  • centisome position:
    • 4.0920453
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_9114&oldid=48062"