Difference between revisions of "ATPSYN-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DAMP DAMP] == * smiles: ** C(C3(C(CC(N2(C1(=C(C(=NC=N1)N)N=C2)))O3)O))OP([O-])([O-])=O * inchi...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ATPSYN-RXN ATPSYN-RXN] == * direction: ** REVERSIBLE * common name: ** v-type_proton_atpase ** ORF...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=DAMP DAMP] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ATPSYN-RXN ATPSYN-RXN] ==
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* smiles:
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* direction:
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** C(C3(C(CC(N2(C1(=C(C(=NC=N1)N)N=C2)))O3)O))OP([O-])([O-])=O
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** REVERSIBLE
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* inchi key:
+
−
** InChIKey=KHWCHTKSEGGWEX-RRKCRQDMSA-L
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* common name:
 
* common name:
−
** dAMP
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** v-type_proton_atpase
−
* molecular weight:
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** ORF
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** 329.208   
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** vacuolar_h+-_sector_c
 +
** v-type_proton_atpase_catalytic_subunit_a
 +
** vacuolar_h+-atpase_v0_subunits_a
 +
** atp_synthase_gamma_chloroplastic
 +
** atp_synthase_gamma_subunit
 +
** atp_synthase_subunit_mitochondrial
 +
** ycf35
 +
** atp_synthase_delta_mitochondrial
 +
** v-type_proton_atpase_subunit_h
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** v-type_protonatpasesubunitd1
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.6.3.14 EC-3.6.3.14]
 
* Synonym(s):
 
* Synonym(s):
−
** 2'-deoxyadenosine 5'-phosphate
 
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** deoxyadenosine-phosphate
 
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** 2'-deoxyadenosine 5''-monophosphate
 
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** 2'-dAMP
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[DEOXYADENYLATE-KINASE-RXN]]
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* With identifiers:
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* [[ATDAM]]
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** 1 [[ADP]][c] '''+''' 4 [[PROTON]][e] '''+''' 1 [[Pi]][c] '''<=>''' 3 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[ATP]][c]
−
== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[RXN-14195]]
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** 1 ADP[c] '''+''' 4 H+[e] '''+''' 1 phosphate[c] '''<=>''' 3 H+[c] '''+''' 1 H2O[c] '''+''' 1 ATP[c]
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* [[DAD2PT]]
+
 
−
* [[RXN-14215]]
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== Genes associated with this reaction  ==
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* [[RXN0-384]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) of unknown directionality ==
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* Gene: [[Tiso_gene_7213]]
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* [[DAMPH]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2798]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1366]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_10981]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15850]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_7215]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_18105]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6012]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_12618]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_11754]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_9460]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_11192]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_11155]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5307]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_6592]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17383]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1365]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_11753]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY-7219]], adenosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7219 PWY-7219]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* CAS : 653-63-4
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* RHEA:
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* METABOLIGHTS : MTBLC58245
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20852 20852]
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* PUBCHEM:
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{{#set: direction=REVERSIBLE}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=22848660 22848660]
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{{#set: common name=v-type_proton_atpase}}
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* HMDB : HMDB00905
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{{#set: common name=ORF}}
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* LIGAND-CPD:
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{{#set: common name=vacuolar_h+-_sector_c}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00360 C00360]
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{{#set: common name=v-type_proton_atpase_catalytic_subunit_a}}
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* CHEMSPIDER:
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{{#set: common name=vacuolar_h+-atpase_v0_subunits_a}}
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** [http://www.chemspider.com/Chemical-Structure.18735032.html 18735032]
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{{#set: common name=atp_synthase_gamma_chloroplastic}}
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* CHEBI:
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{{#set: common name=atp_synthase_gamma_subunit}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58245 58245]
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{{#set: common name=atp_synthase_subunit_mitochondrial}}
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* BIGG : damp
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{{#set: common name=ycf35}}
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{{#set: smiles=C(C3(C(CC(N2(C1(=C(C(=NC=N1)N)N=C2)))O3)O))OP([O-])([O-])=O}}
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{{#set: common name=atp_synthase_delta_mitochondrial}}
−
{{#set: inchi key=InChIKey=KHWCHTKSEGGWEX-RRKCRQDMSA-L}}
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{{#set: common name=v-type_proton_atpase_subunit_h}}
−
{{#set: common name=dAMP}}
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{{#set: common name=v-type_protonatpasesubunitd1}}
−
{{#set: molecular weight=329.208    }}
+
{{#set: ec number=EC-3.6.3.14}}
−
{{#set: common name=2'-deoxyadenosine 5'-phosphate|deoxyadenosine-phosphate|2'-deoxyadenosine 5''-monophosphate|2'-dAMP}}
+
{{#set: gene associated=Tiso_gene_7213|Tiso_gene_2798|Tiso_gene_1366|Tiso_gene_10981|Tiso_gene_15850|Tiso_gene_7215|Tiso_gene_18105|Tiso_gene_6012|Tiso_gene_12618|Tiso_gene_11754|Tiso_gene_9460|Tiso_gene_11192|Tiso_gene_11155|Tiso_gene_5307|Tiso_gene_6592|Tiso_gene_17383|Tiso_gene_1365|Tiso_gene_11753}}
−
{{#set: consumed by=DEOXYADENYLATE-KINASE-RXN|ATDAM}}
+
{{#set: in pathway=PWY-7219}}
−
{{#set: produced by=RXN-14195|DAD2PT|RXN-14215|RXN0-384}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: consumed or produced by=DAMPH}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:21, 21 March 2018

Reaction ATPSYN-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • v-type_proton_atpase
    • ORF
    • vacuolar_h+-_sector_c
    • v-type_proton_atpase_catalytic_subunit_a
    • vacuolar_h+-atpase_v0_subunits_a
    • atp_synthase_gamma_chloroplastic
    • atp_synthase_gamma_subunit
    • atp_synthase_subunit_mitochondrial
    • ycf35
    • atp_synthase_delta_mitochondrial
    • v-type_proton_atpase_subunit_h
    • v-type_protonatpasesubunitd1
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ADP[c] + 4 H+[e] + 1 phosphate[c] <=> 3 H+[c] + 1 H2O[c] + 1 ATP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7219, adenosine ribonucleotides de novo biosynthesis: PWY-7219
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links










Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=ATPSYN-RXN&oldid=48080"