Difference between revisions of "4.2.99.18-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AICARTRANSFORM-RXN AICARTRANSFORM-RXN] == * direction: ** REVERSIBLE * common name: ** bifunctional...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.99.18-RXN 4.2.99.18-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** formamidopyrimidine...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AICARTRANSFORM-RXN AICARTRANSFORM-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.99.18-RXN 4.2.99.18-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** bifunctional_purine_biosynthesis
+
** formamidopyrimidine-dna_glycosylase
 +
** endonuclease_iii
 +
** dna-(apurinic_or_apyrimidinic_site)_lyase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.2.3 EC-2.1.2.3]
+
** [http://enzyme.expasy.org/EC/4.2.99.18 EC-4.2.99.18]
 
* Synonym(s):
 
* Synonym(s):
−
** 5-aminoimidazole-4-carboxamide ribonucleotide transformylase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[FORMYL-THF-GLU-N]][c] '''+''' 1 [[AICAR]][c] '''<=>''' 1 [[PHOSPHORIBOSYL-FORMAMIDO-CARBOXAMIDE]][c] '''+''' 1 [[THF-GLU-N]][c]
+
** 1 [[DNA-containing-abasic-Sites]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[3-terminal-unsaturated-sugars]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 an N10-formyl-tetrahydrofolate[c] '''+''' 1 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide[c] '''<=>''' 1 5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide[c] '''+''' 1 a tetrahydrofolate[c]
+
** 1 a DNA containing an apurinic/apyrimidinic site[c] '''=>''' 1 H+[c] '''+''' 1 a 5'-phospho-[DNA][c] '''+''' 1 a 3'-terminal unsaturated sugar[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[Tiso_gene_18420]]
+
* Gene: [[Tiso_gene_6558]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5102]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_17380]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_14609]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_1280]]
 +
** Source: [[annotation-in-silico_annotation]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6123]], inosine-5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6123 PWY-6123]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6124]], inosine-5'-phosphate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6124 PWY-6124]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
Line 41: Line 48:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22192 22192]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R04560 R04560]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P43852 P43852]
+
** [http://www.uniprot.org/uniprot/P0AB83 P0AB83]
−
** [http://www.uniprot.org/uniprot/P12048 P12048]
+
** [http://www.uniprot.org/uniprot/P28352 P28352]
−
** [http://www.uniprot.org/uniprot/P31335 P31335]
+
** [http://www.uniprot.org/uniprot/Q58829 Q58829]
−
** [http://www.uniprot.org/uniprot/P26978 P26978]
+
** [http://www.uniprot.org/uniprot/Q9PHS1 Q9PHS1]
−
** [http://www.uniprot.org/uniprot/P15639 P15639]
+
** [http://www.uniprot.org/uniprot/Q9JVT0 Q9JVT0]
−
** [http://www.uniprot.org/uniprot/Q9PNY2 Q9PNY2]
+
** [http://www.uniprot.org/uniprot/Q9PNL1 Q9PNL1]
−
** [http://www.uniprot.org/uniprot/Q9JUQ8 Q9JUQ8]
+
** [http://www.uniprot.org/uniprot/P44319 P44319]
−
** [http://www.uniprot.org/uniprot/P31939 P31939]
+
** [http://www.uniprot.org/uniprot/Q9CGM5 Q9CGM5]
−
** [http://www.uniprot.org/uniprot/Q59493 Q59493]
+
** [http://www.uniprot.org/uniprot/P04418 P04418]
−
** [http://www.uniprot.org/uniprot/P38009 P38009]
+
** [http://www.uniprot.org/uniprot/P27695 P27695]
−
** [http://www.uniprot.org/uniprot/P54113 P54113]
+
** [http://www.uniprot.org/uniprot/P23196 P23196]
−
** [http://www.uniprot.org/uniprot/O64767 O64767]
+
** [http://www.uniprot.org/uniprot/P22936 P22936]
−
** [http://www.uniprot.org/uniprot/O74928 O74928]
+
** [http://www.uniprot.org/uniprot/P43138 P43138]
−
{{#set: direction=REVERSIBLE}}
+
** [http://www.uniprot.org/uniprot/P95945 P95945]
−
{{#set: common name=bifunctional_purine_biosynthesis}}
+
** [http://www.uniprot.org/uniprot/P50525 P50525]
−
{{#set: ec number=EC-2.1.2.3}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=5-aminoimidazole-4-carboxamide ribonucleotide transformylase}}
+
{{#set: common name=formamidopyrimidine-dna_glycosylase}}
−
{{#set: gene associated=Tiso_gene_18420}}
+
{{#set: common name=endonuclease_iii}}
−
{{#set: in pathway=PWY-6123|PWY-6124}}
+
{{#set: common name=dna-(apurinic_or_apyrimidinic_site)_lyase}}
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
{{#set: ec number=EC-4.2.99.18}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-esiliculosus}}
+
{{#set: gene associated=Tiso_gene_6558|Tiso_gene_5102|Tiso_gene_17380|Tiso_gene_14609|Tiso_gene_1280}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:21, 21 March 2018

Reaction 4.2.99.18-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • formamidopyrimidine-dna_glycosylase
    • endonuclease_iii
    • dna-(apurinic_or_apyrimidinic_site)_lyase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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