Difference between revisions of "Tiso gene 12988"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTKIN-RXN GLUTKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glutamate_5-kinase ** a...")
(Created page with "Category:Gene == Gene Tiso_gene_12988 == * right end position: ** 6218 * transcription direction: ** POSITIVE * left end position: ** 3992 * centisome position: ** 60.5766...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTKIN-RXN GLUTKIN-RXN] ==
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== Gene Tiso_gene_12988 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 6218
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* common name:
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* transcription direction:
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** glutamate_5-kinase
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** POSITIVE
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** aspartokinase
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* left end position:
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* ec number:
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** 3992
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** [http://enzyme.expasy.org/EC/2.7.2.11 EC-2.7.2.11]
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* centisome position:
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** 60.57663   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[TRYPTOPHAN--TRNA-LIGASE-RXN]]
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** 1 [[GLT]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[L-GLUTAMATE-5-P]][c] '''+''' 1 [[ADP]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 L-glutamate[c] '''+''' 1 ATP[c] '''=>''' 1 γ-L-glutamyl 5-phosphate[c] '''+''' 1 ADP[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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== Pathways associated ==
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* [[Tiso_gene_17057]]
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* [[TRNA-CHARGING-PWY]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_12021]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_16634]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways ==
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* [[PWY-6922]], L-Nδ-acetylornithine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6922 PWY-6922]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PROSYN-PWY]], L-proline biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PROSYN-PWY PROSYN-PWY]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-3341]], L-proline biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3341 PWY-3341]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[ARGININE-SYN4-PWY]], L-ornithine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=ARGININE-SYN4-PWY ARGININE-SYN4-PWY]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=6218}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14877 14877]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=3992}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00239 R00239]
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{{#set: centisome position=60.57663    }}
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* UNIPROT:
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{{#set: reaction associated=TRYPTOPHAN--TRNA-LIGASE-RXN}}
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** [http://www.uniprot.org/uniprot/Q9PJ29 Q9PJ29]
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{{#set: pathway associated=TRNA-CHARGING-PWY}}
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** [http://www.uniprot.org/uniprot/Q9CF72 Q9CF72]
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** [http://www.uniprot.org/uniprot/Q9JUK7 Q9JUK7]
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** [http://www.uniprot.org/uniprot/P43763 P43763]
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** [http://www.uniprot.org/uniprot/P0A7B5 P0A7B5]
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** [http://www.uniprot.org/uniprot/P17856 P17856]
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** [http://www.uniprot.org/uniprot/P32264 P32264]
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** [http://www.uniprot.org/uniprot/P73071 P73071]
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** [http://www.uniprot.org/uniprot/O04226 O04226]
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** [http://www.uniprot.org/uniprot/O13810 O13810]
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** [http://www.uniprot.org/uniprot/P46546 P46546]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=glutamate_5-kinase}}
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{{#set: common name=aspartokinase}}
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{{#set: ec number=EC-2.7.2.11}}
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{{#set: gene associated=Tiso_gene_17057|Tiso_gene_12021|Tiso_gene_16634}}
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{{#set: in pathway=PWY-6922|PROSYN-PWY|PWY-3341|ARGININE-SYN4-PWY|CITRULBIO-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 21:22, 21 March 2018

Gene Tiso_gene_12988

  • right end position:
    • 6218
  • transcription direction:
    • POSITIVE
  • left end position:
    • 3992
  • centisome position:
    • 60.57663
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_12988&oldid=48145"