Difference between revisions of "Tiso gene 12988"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-162 RXN1F-162] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Gene == Gene Tiso_gene_12988 == * right end position: ** 6218 * transcription direction: ** POSITIVE * left end position: ** 3992 * centisome position: ** 60.5766...")
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-162 RXN1F-162] ==
+
== Gene Tiso_gene_12988 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 6218
−
* ec number:
+
* transcription direction:
−
** [http://enzyme.expasy.org/EC/1.14.11 EC-1.14.11]
+
** POSITIVE
 +
* left end position:
 +
** 3992
 +
* centisome position:
 +
** 60.57663   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[TRYPTOPHAN--TRNA-LIGASE-RXN]]
−
** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD1F-95]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[CPD1F-97]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 2-oxoglutarate[c] '''+''' 1 oxygen[c] '''+''' 1 gibberellin A12[c] '''=>''' 1 CO2[c] '''+''' 1 succinate[c] '''+''' 1 gibberellin A15 (open lactone form)[c]
+
** Source: [[annotation-experimental_annotation]]
−
 
+
*** Assignment: ec-number
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Tiso_gene_3330]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
== Pathways  ==
+
−
* [[PWY-5070]], gibberellin biosynthesis I (non C-3, non C-13 hydroxylation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5070 PWY-5070]
+
−
** '''3''' reactions found over '''7''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-athaliana]]
+
−
*** Tool: [[pantograph]]
+
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
−
*** Tool: [[pantograph]]
+
== Pathways associated ==
 +
* [[TRNA-CHARGING-PWY]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: right end position=6218}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R06322 R06322]
+
{{#set: transcription direction=POSITIVE}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: left end position=3992}}
−
{{#set: ec number=EC-1.14.11}}
+
{{#set: centisome position=60.57663    }}
−
{{#set: gene associated=Tiso_gene_3330}}
+
{{#set: reaction associated=TRYPTOPHAN--TRNA-LIGASE-RXN}}
−
{{#set: in pathway=PWY-5070}}
+
{{#set: pathway associated=TRNA-CHARGING-PWY}}
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph}}
+

Latest revision as of 20:22, 21 March 2018

Gene Tiso_gene_12988

  • right end position:
    • 6218
  • transcription direction:
    • POSITIVE
  • left end position:
    • 3992
  • centisome position:
    • 60.57663
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_12988&oldid=48145"