Difference between revisions of "RXN1F-147"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASNSYNA-RXN ASNSYNA-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** asparagine_synthetase *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-147 RXN1F-147] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASNSYNA-RXN ASNSYNA-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1F-147 RXN1F-147] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** asparagine_synthetase
 
−
** asparagine_synthetase_domaincontaining_protein_putat
 
−
** aspartate-ammonia_ligase
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.3.1.1 EC-6.3.1.1]
+
** [http://enzyme.expasy.org/EC/5.5.1.18 EC-5.5.1.18]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[L-ASPARTATE]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[ASN]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[CPD1F-114]][c] '''=>''' 1 [[CPD1F-115]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 ammonium[c] '''+''' 1 L-aspartate[c] '''=>''' 1 diphosphate[c] '''+''' 1 L-asparagine[c] '''+''' 1 AMP[c] '''+''' 1 H+[c]
+
** 1 all-trans-lycopene[c] '''=>''' 1 δ-carotene[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_2973]]
+
* Gene: [[Tiso_gene_11980]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-athaliana]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-creinhardtii]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_8263]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[orthology-athaliana]]
−
* [[Tiso_gene_7495]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_6282]]
−
***EC-NUMBER
+
** Source: [[orthology-athaliana]]
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_3577]]
−
* [[Tiso_gene_1462]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_1547]]
−
***EC-NUMBER
+
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_4457]]
 +
** Source: [[orthology-athaliana]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[ASPARAGINESYN-PWY]], L-asparagine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGINESYN-PWY ASPARAGINESYN-PWY]
+
* [[PWY-5946]], δ-carotene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5946 PWY-5946]
 
** '''1''' reactions found over '''1''' reactions in the full pathway
 
** '''1''' reactions found over '''1''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[annotation]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11372 11372]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00483 R00483]
+
** [http://www.genome.jp/dbget-bin/www_bget?R06963 R06963]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P00963 P00963]
+
−
** [http://www.uniprot.org/uniprot/P08243 P08243]
+
−
** [http://www.uniprot.org/uniprot/P44338 P44338]
+
−
** [http://www.uniprot.org/uniprot/P49088 P49088]
+
−
** [http://www.uniprot.org/uniprot/P54264 P54264]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=asparagine_synthetase}}
+
{{#set: ec number=EC-5.5.1.18}}
−
{{#set: common name=asparagine_synthetase_domaincontaining_protein_putat}}
+
{{#set: gene associated=Tiso_gene_11980|Tiso_gene_8263|Tiso_gene_6282|Tiso_gene_3577|Tiso_gene_1547|Tiso_gene_4457}}
−
{{#set: common name=aspartate-ammonia_ligase}}
+
{{#set: in pathway=PWY-5946}}
−
{{#set: ec number=EC-6.3.1.1}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: gene associated=Tiso_gene_2973|Tiso_gene_7495|Tiso_gene_1462}}
+
{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|orthology-esiliculosus}}
−
{{#set: in pathway=ASPARAGINESYN-PWY}}
+
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 21:22, 21 March 2018

Reaction RXN1F-147

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 all-trans-lycopene[c] => 1 δ-carotene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5946, δ-carotene biosynthesis: PWY-5946
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN1F-147&oldid=48176"