Difference between revisions of "2.4.1.225-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12484 RXN-12484] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/1.1...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.225-RXN 2.4.1.225-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** exostosin-1 * ec nu...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12484 RXN-12484] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.225-RXN 2.4.1.225-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** exostosin-1
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.2 EC-1.1.1.2]
+
** [http://enzyme.expasy.org/EC/2.4.1.225 EC-2.4.1.225]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NADP]][c] '''+''' 1 [[ETOH]][c] '''<=>''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ACETALD]][c]
+
** 1 [[GlcNAc-GlcA-Gal-Gal-Xyl-Protein]][c] '''+''' 1 [[UDP-GLUCURONATE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[GlcA-GlcNAc-GlcA-Gal-Gal-Xyl-Protein]][c] '''+''' 1 [[UDP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NADP+[c] '''+''' 1 ethanol[c] '''<=>''' 1 NADPH[c] '''+''' 1 H+[c] '''+''' 1 acetaldehyde[c]
+
** 1 a [protein]-3-O-(&alpha;-D-GlcNAc-(1&rarr;4)-&beta;-D-GlcA-(1&rarr;3)-&beta;-D-Gal-(1&rarr;3)-&beta;-D-Gal-(1&rarr;4)-&beta;-D-Xyl)-L-serine[c] '''+''' 1 UDP-&alpha;-D-glucuronate[c] '''=>''' 1 H+[c] '''+''' 1 a [protein]-3-O-(&beta;-D-GlcA-(1&rarr;3)-&alpha;-D-GlcNAc-(1&rarr;4)-&beta;-D-GlcA-(1&rarr;3)-&beta;-D-Gal-(1&rarr;3)-&beta;-D-Gal-(1&rarr;4)-&beta;-D-Xyl)-L-serine[c] '''+''' 1 UDP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14126]]
+
* Gene: [[Tiso_gene_6495]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-6558]], heparan sulfate biosynthesis (late stages): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6558 PWY-6558]
 +
** '''3''' reactions found over '''13''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
+
* Category: [[annotation]]
−
** Source: [[orthology-synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pantograph]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00746 R00746]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07335 R07335]
−
{{#set: direction=REVERSIBLE}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-1.1.1.2}}
+
{{#set: common name=exostosin-1}}
−
{{#set: gene associated=Tiso_gene_14126}}
+
{{#set: ec number=EC-2.4.1.225}}
−
{{#set: in pathway=}}
+
{{#set: gene associated=Tiso_gene_6495}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=PWY-6558}}
−
{{#set: reconstruction source=orthology-synechocystis}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 20:22, 21 March 2018

Reaction 2.4.1.225-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • exostosin-1
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a [protein]-3-O-(α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine[c] + 1 UDP-α-D-glucuronate[c] => 1 H+[c] + 1 a [protein]-3-O-(β-D-GlcA-(1→3)-α-D-GlcNAc-(1→4)-β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine[c] + 1 UDP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6558, heparan sulfate biosynthesis (late stages): PWY-6558
    • 3 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





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