Difference between revisions of "2.7.7.8-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14277 RXN-14277] == * direction: ** REVERSIBLE * common name: ** hexanoyl-CoA C-acyltransferase...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.7.8-RXN 2.7.7.8-RXN] == * direction: ** REVERSIBLE * common name: ** polynucleotide_phosphoryla...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14277 RXN-14277] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.7.8-RXN 2.7.7.8-RXN] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 
* common name:
 
* common name:
−
** hexanoyl-CoA C-acyltransferase
+
** polynucleotide_phosphorylase_polyadenylase
−
** thiolase
+
−
** acetyl-_c-acetyltransferase
+
−
** 3-ketoacyl-_thiolase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
+
** [http://enzyme.expasy.org/EC/2.7.7.8 EC-2.7.7.8]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[HEXANOYL-COA]][c] '''+''' 1 [[ACETYL-COA]][c] '''<=>''' 1 [[CPD0-2106]][c] '''+''' 1 [[CO-A]][c]
+
** 1 [[ssRNAs]][c] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[Nucleoside-Diphosphates]][c] '''+''' 1 [[ssRNAs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 hexanoyl-CoA[c] '''+''' 1 acetyl-CoA[c] '''<=>''' 1 3-oxooctanoyl-CoA[c] '''+''' 1 coenzyme A[c]
+
** 1 a single-stranded RNA[c] '''+''' 1 phosphate[c] '''<=>''' 1 a nucleoside diphosphate[c] '''+''' 1 a single-stranded RNA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_3855]]
+
* Gene: [[Tiso_gene_2987]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_10116]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_15327]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_16181]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_3856]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17451]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
Line 57: Line 34:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31205 31205]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04747 R04747]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07282 R07282]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P44584 P44584]
 +
** [http://www.uniprot.org/uniprot/Q9PN44 Q9PN44]
 +
** [http://www.uniprot.org/uniprot/P05055 P05055]
 +
** [http://www.uniprot.org/uniprot/Q9JV72 Q9JV72]
 +
** [http://www.uniprot.org/uniprot/P41121 P41121]
 +
** [http://www.uniprot.org/uniprot/P50849 P50849]
 +
** [http://www.uniprot.org/uniprot/P72659 P72659]
 +
** [http://www.uniprot.org/uniprot/O24288 O24288]
 +
** [http://www.uniprot.org/uniprot/Q8CJQ6 Q8CJQ6]
 +
** [http://www.uniprot.org/uniprot/O32966 O32966]
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=hexanoyl-CoA C-acyltransferase}}
+
{{#set: common name=polynucleotide_phosphorylase_polyadenylase}}
−
{{#set: common name=thiolase}}
+
{{#set: ec number=EC-2.7.7.8}}
−
{{#set: common name=acetyl-_c-acetyltransferase}}
+
{{#set: gene associated=Tiso_gene_2987}}
−
{{#set: common name=3-ketoacyl-_thiolase}}
+
−
{{#set: ec number=EC-2.3.1.16}}
+
−
{{#set: gene associated=Tiso_gene_3855|Tiso_gene_10116|Tiso_gene_15327|Tiso_gene_16181|Tiso_gene_3856|Tiso_gene_17451}}
+
 
{{#set: in pathway=}}
 
{{#set: in pathway=}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:23, 21 March 2018

Reaction 2.7.7.8-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • polynucleotide_phosphorylase_polyadenylase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a single-stranded RNA[c] + 1 phosphate[c] <=> 1 a nucleoside diphosphate[c] + 1 a single-stranded RNA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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