Difference between revisions of "RETINOL-DEHYDROGENASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN 3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN] == * direction: ** L...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RETINOL-DEHYDROGENASE-RXN RETINOL-DEHYDROGENASE-RXN] == * direction: ** REVERSIBLE * common name: *...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN 3-HYDROXYISOBUTYRATE-DEHYDROGENASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RETINOL-DEHYDROGENASE-RXN RETINOL-DEHYDROGENASE-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** 3-hydroxyisobutyrate_mitochondrial
+
** all-trans-retinol dehydrogenase (NAD)
−
** 3-hydroxyisobutyrate_dehydrogenase
+
** dehydrogenase_reductase_sdr_family_member_on_chromosome_x-like
−
** uncharacterized_oxidoreductase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.31 EC-1.1.1.31]
+
** [http://enzyme.expasy.org/EC/1.1.1.105 EC-1.1.1.105]
 
* Synonym(s):
 
* Synonym(s):
 +
** all-trans retinol dehydrogenase
 +
** retinal reductase
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NAD]][c] '''+''' 1 [[CPD-12175]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CH3-MALONATE-S-ALD]][c] '''+''' 1 [[NADH]][c]
+
** 1 [[CPD-13524]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[RETINAL]][c] '''+''' 1 [[NADH]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NAD+[c] '''+''' 1 (S)-3-hydroxy-isobutanoate[c] '''=>''' 1 H+[c] '''+''' 1 (S)-methylmalonate-semialdehyde[c] '''+''' 1 NADH[c]
+
** 1 all-trans-retinol[c] '''+''' 1 NAD+[c] '''<=>''' 1 H+[c] '''+''' 1 all-trans-retinal[c] '''+''' 1 NADH[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_19590]]
+
* Gene: [[Tiso_gene_17086]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
* Gene: [[Tiso_gene_18459]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[orthology-athaliana]]
−
* [[Tiso_gene_7107]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_19771]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_19772]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_5857]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_19592]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[VALDEG-PWY]], L-valine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY]
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21284 21284]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02047 R02047]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02124 R02124]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P29266 P29266]
+
** [http://www.uniprot.org/uniprot/P50169 P50169]
−
** [http://www.uniprot.org/uniprot/P28811 P28811]
+
** [http://www.uniprot.org/uniprot/Q64437 Q64437]
−
** [http://www.uniprot.org/uniprot/Q8XAE4 Q8XAE4]
+
** [http://www.uniprot.org/uniprot/P40394 P40394]
−
** [http://www.uniprot.org/uniprot/Q55702 Q55702]
+
** [http://www.uniprot.org/uniprot/P50170 P50170]
−
** [http://www.uniprot.org/uniprot/Q9XTI0 Q9XTI0]
+
{{#set: direction=REVERSIBLE}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: common name=all-trans-retinol dehydrogenase (NAD)}}
−
{{#set: common name=3-hydroxyisobutyrate_mitochondrial}}
+
{{#set: common name=dehydrogenase_reductase_sdr_family_member_on_chromosome_x-like}}
−
{{#set: common name=3-hydroxyisobutyrate_dehydrogenase}}
+
{{#set: ec number=EC-1.1.1.105}}
−
{{#set: common name=uncharacterized_oxidoreductase}}
+
{{#set: common name=all-trans retinol dehydrogenase|retinal reductase}}
−
{{#set: ec number=EC-1.1.1.31}}
+
{{#set: gene associated=Tiso_gene_17086|Tiso_gene_18459}}
−
{{#set: gene associated=Tiso_gene_19590|Tiso_gene_7107|Tiso_gene_19771|Tiso_gene_19772|Tiso_gene_5857|Tiso_gene_19592}}
+
{{#set: in pathway=}}
−
{{#set: in pathway=VALDEG-PWY}}
+
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=orthology-creinhardtii|orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus|annotation-experimental_annotation}}
+
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:23, 21 March 2018

Reaction RETINOL-DEHYDROGENASE-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • all-trans-retinol dehydrogenase (NAD)
    • dehydrogenase_reductase_sdr_family_member_on_chromosome_x-like
  • ec number:
  • Synonym(s):
    • all-trans retinol dehydrogenase
    • retinal reductase

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 all-trans-retinol[c] + 1 NAD+[c] <=> 1 H+[c] + 1 all-trans-retinal[c] + 1 NADH[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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