Difference between revisions of "RXN-8028"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSMETB12-RXN HOMOCYSMETB12-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec nu...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8028 RXN-8028] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/5....")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSMETB12-RXN HOMOCYSMETB12-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8028 RXN-8028] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** ORF
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.1.13 EC-2.1.1.13]
+
** [http://enzyme.expasy.org/EC/5.5.1.18 EC-5.5.1.18]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[HOMO-CYS]][c] '''+''' 1 [[5-METHYL-THF-GLU-N]][c] '''=>''' 1 [[MET]][c] '''+''' 1 [[THF-GLU-N]][c]
+
** 1 [[CPD1F-115]][c] '''=>''' 1 [[CPD-7414]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-homocysteine[c] '''+''' 1 an N5-methyl-tetrahydrofolate[c] '''=>''' 1 L-methionine[c] '''+''' 1 a tetrahydrofolate[c]
+
** 1 δ-carotene[c] '''=>''' 1 ε-carotene[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_1602]]
+
* Gene: [[Tiso_gene_11980]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-athaliana]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-creinhardtii]]
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
+
* [[PWY-5175]], lactucaxanthin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5175 PWY-5175]
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[ADENOSYLHOMOCYSCAT-PWY]], L-methionine salvage from L-homocysteine: [http://metacyc.org/META/NEW-IMAGE?object=ADENOSYLHOMOCYSCAT-PWY ADENOSYLHOMOCYSCAT-PWY]
+
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
−
* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
+
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
−
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=HOMOSER-METSYN-PWY HOMOSER-METSYN-PWY]
+
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
−
* [[HSERMETANA-PWY]], L-methionine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=HSERMETANA-PWY HSERMETANA-PWY]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
+
−
** '''7''' reactions found over '''12''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[manual]]:
+
** Source: [[orthology-creinhardtii]]
−
** [[primary_network]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-esiliculosus]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11172 11172]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00946 R00946]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07840 R07840]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q57195 Q57195]
+
−
** [http://www.uniprot.org/uniprot/Q9RVQ6 Q9RVQ6]
+
−
** [http://www.uniprot.org/uniprot/O33259 O33259]
+
−
** [http://www.uniprot.org/uniprot/Q55786 Q55786]
+
−
** [http://www.uniprot.org/uniprot/Q09582 Q09582]
+
−
** [http://www.uniprot.org/uniprot/Q9Z2Q4 Q9Z2Q4]
+
−
** [http://www.uniprot.org/uniprot/P13009 P13009]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ORF}}
+
{{#set: ec number=EC-5.5.1.18}}
−
{{#set: ec number=EC-2.1.1.13}}
+
{{#set: gene associated=Tiso_gene_11980}}
−
{{#set: gene associated=Tiso_gene_1602}}
+
{{#set: in pathway=PWY-5175}}
−
{{#set: in pathway=PWY-3841|ADENOSYLHOMOCYSCAT-PWY|1CMET2-PWY|HOMOSER-METSYN-PWY|HSERMETANA-PWY|PWY-2201}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=esiliculosus}}
 
−
{{#set: reconstruction category=manual}}
 
−
{{#set: reconstruction source=primary_network}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 21:23, 21 March 2018

Reaction RXN-8028

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 δ-carotene[c] => 1 ε-carotene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5175, lactucaxanthin biosynthesis: PWY-5175
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-8028&oldid=48367"