Difference between revisions of "Tiso gene 16113"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6479 RXN0-6479] == * direction: ** LEFT-TO-RIGHT * common name: ** exosome_complex_exonuclease...")
(Created page with "Category:Gene == Gene Tiso_gene_16113 == * right end position: ** 5154 * transcription direction: ** POSITIVE * left end position: ** 3574 * centisome position: ** 48.1217...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6479 RXN0-6479] ==
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== Gene Tiso_gene_16113 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 5154
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* common name:
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* transcription direction:
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** exosome_complex_exonuclease
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/3.1.13.1 EC-3.1.13.1]
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** 3574
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* centisome position:
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** 48.12172   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ACYLCOADEHYDROG-RXN]]
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** n [[WATER]][c] '''+''' 1 [[CPD0-2351]][c] '''=>''' n [[Nucleoside-Monophosphates]][c] '''+''' 1 [[CPD0-2352]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** n H2O[c] '''+''' 1 a tRNA precursor with a 5' extension and a long 3' trailer[c] '''=>''' n a nucleoside 5'-monophosphate[c] '''+''' 1 a tRNA precursor with a 5' extension and a short 3' extension[c]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[BCor]]
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== Genes associated with this reaction  ==
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** Source: [[orthology-creinhardtii]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[IVCDH]]
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* [[Tiso_gene_11612]]
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** Source: [[orthology-creinhardtii]]
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** IN-SILICO_ANNOTATION
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* Reaction: [[LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN]]
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***EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* [[Tiso_gene_11613]]
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* Reaction: [[MCDH]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-creinhardtii]]
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***EC-NUMBER
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* Reaction: [[MCDH_2mb2coa]]
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== Pathways  ==
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** Source: [[orthology-creinhardtii]]
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* [[PWY0-1479]], tRNA processing: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1479 PWY0-1479]
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* Reaction: [[RXN-17775]]
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** '''4''' reactions found over '''10''' reactions in the full pathway
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** Source: [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** Assignment: automated-name-match
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* Category: [[annotation]]
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* Reaction: [[RXN-17779]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-17783]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-17784]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-17788]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-17792]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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* Reaction: [[RXN-17796]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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== Pathways associated ==
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* [[FAO-PWY]]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=5154}}
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{{#set: common name=exosome_complex_exonuclease}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: ec number=EC-3.1.13.1}}
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{{#set: left end position=3574}}
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{{#set: gene associated=Tiso_gene_11612|Tiso_gene_11613}}
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{{#set: centisome position=48.12172    }}
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{{#set: in pathway=PWY0-1479}}
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{{#set: reaction associated=ACYLCOADEHYDROG-RXN|BCor|IVCDH|LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN|MCDH|MCDH_2mb2coa|RXN-17775|RXN-17779|RXN-17783|RXN-17784|RXN-17788|RXN-17792|RXN-17796}}
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{{#set: reconstruction category=annotation}}
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{{#set: pathway associated=FAO-PWY}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Latest revision as of 21:23, 21 March 2018

Gene Tiso_gene_16113

  • right end position:
    • 5154
  • transcription direction:
    • POSITIVE
  • left end position:
    • 3574
  • centisome position:
    • 48.12172
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_16113&oldid=48375"