Difference between revisions of "Tiso gene 2160"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14793 RXN-14793] == * direction: ** LEFT-TO-RIGHT * common name: ** acetyl-_c-acetyltransferase...")
(Created page with "Category:Gene == Gene Tiso_gene_2160 == * right end position: ** 16906 * transcription direction: ** NEGATIVE * left end position: ** 15854 * centisome position: ** 77.677...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14793 RXN-14793] ==
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== Gene Tiso_gene_2160 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 16906
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* common name:
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* transcription direction:
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** acetyl-_c-acetyltransferase
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** NEGATIVE
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** 3-ketoacyl-_thiolase
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* left end position:
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** thiolase
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** 15854
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
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** 77.677605   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[PYRIMSYN3-RXN]]
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** 1 [[CO-A]][c] '''+''' 1 [[CPD-15678]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CPD-15663]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 coenzyme A[c] '''+''' 1 4-trans-3-oxo-undecenoyl-CoA[c] '''=>''' 1 acetyl-CoA[c] '''+''' 1 2-trans-nonenoyl-CoA[c]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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== Genes associated with this reaction  ==
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* Reaction: [[RXN-12610]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_3855]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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* Reaction: [[RXN-12611]]
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***EC-NUMBER
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** Source: [[annotation-in-silico_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[THI-P-SYN-RXN]]
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* [[Tiso_gene_10116]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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** Source: [[orthology-athaliana]]
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** EXPERIMENTAL_ANNOTATION
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** Source: [[orthology-esiliculosus]]
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***EC-NUMBER
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== Pathways associated ==
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* [[Tiso_gene_3856]]
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* [[PWY-6907]]
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** IN-SILICO_ANNOTATION
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* [[PWY-6890]]
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***EC-NUMBER
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* [[PWY-7356]]
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* [[Tiso_gene_15327]]
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* [[PWY-7357]]
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** EXPERIMENTAL_ANNOTATION
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* [[PWY-6894]]
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***EC-NUMBER
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* [[PWY-6897]]
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* [[Tiso_gene_17451]]
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* [[PWY-7282]]
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** IN-SILICO_ANNOTATION
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* [[PWY-6908]]
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***EC-NUMBER
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* [[PWY-6893]]
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** EXPERIMENTAL_ANNOTATION
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* [[PWY-6910]]
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-7339]], 10-trans-heptadecenoyl-CoA degradation (MFE-dependent, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7339 PWY-7339]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=16906}}
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{{#set: common name=acetyl-_c-acetyltransferase}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=3-ketoacyl-_thiolase}}
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{{#set: left end position=15854}}
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{{#set: common name=thiolase}}
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{{#set: centisome position=77.677605    }}
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{{#set: ec number=EC-2.3.1.16}}
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{{#set: reaction associated=PYRIMSYN3-RXN|RXN-12610|RXN-12611|THI-P-SYN-RXN}}
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{{#set: gene associated=Tiso_gene_3855|Tiso_gene_10116|Tiso_gene_3856|Tiso_gene_15327|Tiso_gene_17451}}
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{{#set: pathway associated=PWY-6907|PWY-6890|PWY-7356|PWY-7357|PWY-6894|PWY-6897|PWY-7282|PWY-6908|PWY-6893|PWY-6910}}
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{{#set: in pathway=PWY-7339}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 21:23, 21 March 2018

Gene Tiso_gene_2160

  • right end position:
    • 16906
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 15854
  • centisome position:
    • 77.677605
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_2160&oldid=48393"