Difference between revisions of "CPD-9700"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIMSYN3-RXN PYRIMSYN3-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphomethylpyrimi...")
 
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-9700 CPD-9700] == * smiles: ** C=C1(C(CC(C(=O)[O-])NC(CCC([N+])C([O-])=O)=O)C1) * common na...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIMSYN3-RXN PYRIMSYN3-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-9700 CPD-9700] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C=C1(C(CC(C(=O)[O-])NC(CCC([N+])C([O-])=O)=O)C1)
 
* common name:
 
* common name:
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** phosphomethylpyrimidine_kinase
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** hypoglycin B
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** thiamine_monophosphate_synthase
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* inchi key:
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* ec number:
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** InChIKey=UYDZYCPIQSRXKU-NPPUSCPJSA-M
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** [http://enzyme.expasy.org/EC/2.7.4.7 EC-2.7.4.7]
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* molecular weight:
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** 269.277   
 
* Synonym(s):
 
* Synonym(s):
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** hypoglycine B
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** L-gamma-glutamyl-L-hypoglycin
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** γ-glutamyl-β-(methylenecyclopropyl)-alanine
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** (2S)-2-amino-5-[[(2S)-1-hydroxy-3-[(1S)-2-methylidenecyclopropyl]-1-oxopropan-2-yl]amino]-5-oxopentanoic acid
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[AMINO-HYDROXYMETHYL-METHYL-PYR-P]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c] '''+''' 1 [[ADP]][c]
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* [[RXN-9157]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine[c] '''+''' 1 ATP[c] '''=>''' 1 4-amino-2-methyl-5-(diphosphomethyl)pyrimidine[c] '''+''' 1 ADP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_2160]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_16224]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_17192]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_2159]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-6910]], hydroxymethylpyrimidine salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6910 PWY-6910]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7356]], thiamine salvage IV (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7356 PWY-7356]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-6890]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6890 PWY-6890]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7357]], thiamine formation from pyrithiamine and oxythiamine (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7357 PWY-7357]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19893 19893]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=90658135 90658135]
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* LIGAND-RXN:
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* HMDB : HMDB29428
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** [http://www.genome.jp/dbget-bin/www_bget?R04509 R04509]
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* Wikipedia : Hypoglycin_B
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* UNIPROT:
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/Q9JTE1 Q9JTE1]
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** [http://www.genome.jp/dbget-bin/www_bget?C08280 C08280]
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** [http://www.uniprot.org/uniprot/Q9PNL2 Q9PNL2]
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{{#set: smiles=C=C1(C(CC(C(=O)[O-])NC(CCC([N+])C([O-])=O)=O)C1)}}
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** [http://www.uniprot.org/uniprot/Q9CI79 Q9CI79]
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{{#set: common name=hypoglycin B}}
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** [http://www.uniprot.org/uniprot/Q9CG47 Q9CG47]
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{{#set: inchi key=InChIKey=UYDZYCPIQSRXKU-NPPUSCPJSA-M}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: molecular weight=269.277    }}
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{{#set: common name=phosphomethylpyrimidine_kinase}}
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{{#set: common name=hypoglycine B|L-gamma-glutamyl-L-hypoglycin|γ-glutamyl-β-(methylenecyclopropyl)-alanine|(2S)-2-amino-5-[[(2S)-1-hydroxy-3-[(1S)-2-methylidenecyclopropyl]-1-oxopropan-2-yl]amino]-5-oxopentanoic acid}}
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{{#set: common name=thiamine_monophosphate_synthase}}
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{{#set: produced by=RXN-9157}}
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{{#set: ec number=EC-2.7.4.7}}
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{{#set: gene associated=Tiso_gene_2160|Tiso_gene_16224|Tiso_gene_17192|Tiso_gene_2159}}
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{{#set: in pathway=PWY-6910|PWY-7282|PWY-7356|PWY-6890|PWY-7357}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus|athaliana}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 20:24, 21 March 2018

Metabolite CPD-9700

  • smiles:
    • C=C1(C(CC(C(=O)[O-])NC(CCC([N+])C([O-])=O)=O)C1)
  • common name:
    • hypoglycin B
  • inchi key:
    • InChIKey=UYDZYCPIQSRXKU-NPPUSCPJSA-M
  • molecular weight:
    • 269.277
  • Synonym(s):
    • hypoglycine B
    • L-gamma-glutamyl-L-hypoglycin
    • γ-glutamyl-β-(methylenecyclopropyl)-alanine
    • (2S)-2-amino-5-[[(2S)-1-hydroxy-3-[(1S)-2-methylidenecyclopropyl]-1-oxopropan-2-yl]amino]-5-oxopentanoic acid

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • PUBCHEM:
  • HMDB : HMDB29428
  • Wikipedia : Hypoglycin_B
  • LIGAND-CPD:
"C=C1(C(CC(C(=O)[O-])NC(CCC([N+])C([O-])=O)=O)C1)" cannot be used as a page name in this wiki.


{{#set: common name=hypoglycine B|L-gamma-glutamyl-L-hypoglycin|γ-glutamyl-β-(methylenecyclopropyl)-alanine|(2S)-2-amino-5-[[(2S)-1-hydroxy-3-[(1S)-2-methylidenecyclopropyl]-1-oxopropan-2-yl]amino]-5-oxopentanoic acid}}

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-9700&oldid=48431"