Difference between revisions of "HOMOCYSMETB12-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_16113 == * left end position: ** 3574 * transcription direction: ** POSITIVE * right end position: ** 5154 * centisome position: ** 48.1217...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSMETB12-RXN HOMOCYSMETB12-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec nu...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_16113 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOCYSMETB12-RXN HOMOCYSMETB12-RXN] ==
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* left end position:
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* direction:
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** 3574
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** ORF
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* right end position:
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* ec number:
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** 5154
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** [http://enzyme.expasy.org/EC/2.1.1.13 EC-2.1.1.13]
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* centisome position:
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** 48.12172   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[ACYLCOADEHYDROG-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[5-METHYL-THF-GLU-N]][c] '''+''' 1 [[HOMO-CYS]][c] '''=>''' 1 [[THF-GLU-N]][c] '''+''' 1 [[MET]][c]
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***automated-name-match
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* With common name(s):
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** [[pantograph]]-[[esiliculosus]]
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** 1 an N5-methyl-tetrahydrofolate[c] '''+''' 1 L-homocysteine[c] '''=>''' 1 a tetrahydrofolate[c] '''+''' 1 L-methionine[c]
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* [[BCor]]
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** [[pantograph]]-[[creinhardtii]]
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== Genes associated with this reaction  ==
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* [[IVCDH]]
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Genes have been associated with this reaction based on different elements listed below.
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** [[pantograph]]-[[creinhardtii]]
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* Gene: [[Tiso_gene_1602]]
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* [[LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: EC-NUMBER
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* [[MCDH]]
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** Source: [[annotation-experimental_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** Assignment: EC-NUMBER
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* [[MCDH_2mb2coa]]
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[RXN-17775]]
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* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
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** in-silico_annotation
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** '''9''' reactions found over '''11''' reactions in the full pathway
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***automated-name-match
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* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=HOMOSER-METSYN-PWY HOMOSER-METSYN-PWY]
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* [[RXN-17779]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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** in-silico_annotation
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* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
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***automated-name-match
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[RXN-17783]]
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* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
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** in-silico_annotation
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** '''7''' reactions found over '''12''' reactions in the full pathway
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***automated-name-match
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* [[HSERMETANA-PWY]], L-methionine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=HSERMETANA-PWY HSERMETANA-PWY]
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* [[RXN-17784]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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** in-silico_annotation
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* [[ADENOSYLHOMOCYSCAT-PWY]], L-methionine salvage from L-homocysteine: [http://metacyc.org/META/NEW-IMAGE?object=ADENOSYLHOMOCYSCAT-PWY ADENOSYLHOMOCYSCAT-PWY]
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***automated-name-match
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[RXN-17788]]
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== Reconstruction information  ==
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** in-silico_annotation
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* Category: [[orthology]]
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***automated-name-match
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** Source: [[orthology-esiliculosus]]
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* [[RXN-17792]]
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*** Tool: [[pantograph]]
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** in-silico_annotation
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* Category: [[manual]]
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***automated-name-match
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** Source: [[manual-primary_network]]
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* [[RXN-17796]]
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* Category: [[annotation]]
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** in-silico_annotation
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** Source: [[annotation-experimental_annotation]]
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***automated-name-match
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*** Tool: [[pathwaytools]]
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== Pathways associated ==
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** Source: [[annotation-in-silico_annotation]]
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* [[FAO-PWY]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=3574}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11172 11172]
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{{#set: right end position=5154}}
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* LIGAND-RXN:
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{{#set: centisome position=48.12172    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00946 R00946]
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{{#set: reaction associated=ACYLCOADEHYDROG-RXN|BCor|IVCDH|LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN|MCDH|MCDH_2mb2coa|RXN-17775|RXN-17779|RXN-17783|RXN-17784|RXN-17788|RXN-17792|RXN-17796}}
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* UNIPROT:
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{{#set: pathway associated=FAO-PWY}}
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** [http://www.uniprot.org/uniprot/Q57195 Q57195]
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** [http://www.uniprot.org/uniprot/Q9RVQ6 Q9RVQ6]
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** [http://www.uniprot.org/uniprot/O33259 O33259]
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** [http://www.uniprot.org/uniprot/Q55786 Q55786]
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** [http://www.uniprot.org/uniprot/Q09582 Q09582]
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** [http://www.uniprot.org/uniprot/Q9Z2Q4 Q9Z2Q4]
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** [http://www.uniprot.org/uniprot/P13009 P13009]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-2.1.1.13}}
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{{#set: gene associated=Tiso_gene_1602}}
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{{#set: in pathway=PWY-3841|HOMOSER-METSYN-PWY|1CMET2-PWY|PWY-2201|HSERMETANA-PWY|ADENOSYLHOMOCYSCAT-PWY}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:24, 21 March 2018

Reaction HOMOCYSMETB12-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 an N5-methyl-tetrahydrofolate[c] + 1 L-homocysteine[c] => 1 a tetrahydrofolate[c] + 1 L-methionine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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