Difference between revisions of "RXN-14217"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUCOKIN-RXN GLUCOKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glucokinase ** hexoki...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14217 RXN-14217] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * Synonym(s): == React...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUCOKIN-RXN GLUCOKIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14217 RXN-14217] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** glucokinase
+
** ORF
−
** hexokinase
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.7.1.1 EC-2.7.1.1]
+
−
** [http://enzyme.expasy.org/EC/2.7.1.2 EC-2.7.1.2]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[Glucopyranose]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[D-glucopyranose-6-phosphate]][c] '''+''' 1 [[ADP]][c]
+
** 1 [[DGTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[DGDP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 D-glucopyranose[c] '''=>''' 1 H+[c] '''+''' 1 D-glucopyranose 6-phosphate[c] '''+''' 1 ADP[c]
+
** 1 dGTP[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 phosphate[c] '''+''' 1 dGDP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_1303]]
+
* Gene: [[Tiso_gene_12899]]
−
** IN-SILICO_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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** Source: [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[synechocystis]]
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* Gene: [[Tiso_gene_20236]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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* [[Tiso_gene_3107]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7238]], sucrose biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7238 PWY-7238]
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
−
* [[TREDEGLOW-PWY]], trehalose degradation I (low osmolarity): [http://metacyc.org/META/NEW-IMAGE?object=TREDEGLOW-PWY TREDEGLOW-PWY]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-621]], sucrose degradation III (sucrose invertase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-621 PWY-621]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
* [[GLYCOCAT-PWY]], glycogen degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLYCOCAT-PWY GLYCOCAT-PWY]
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY0-1182]], trehalose degradation II (trehalase): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1182 PWY0-1182]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
 
−
** '''11''' reactions found over '''15''' reactions in the full pathway
 
−
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[GLUCOSE1PMETAB-PWY]], glucose and glucose-1-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=GLUCOSE1PMETAB-PWY GLUCOSE1PMETAB-PWY]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5514]], UDP-N-acetyl-D-galactosamine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5514 PWY-5514]
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-2723]], trehalose degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2723 PWY-2723]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
 
−
** '''14''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY-2722]], trehalose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2722 PWY-2722]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5661]], GDP-glucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5661 PWY-5661]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[synechocystis]]
+
*** Tool: [[pantograph]]
−
*** [[esiliculosus]]
+
* Category: [[annotation]]
−
* [[annotation]]:
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pathwaytools]]:
+
*** Tool: [[pathwaytools]]
−
*** [[experimental_annotation]]
+
** Source: [[annotation-experimental_annotation]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17825 17825]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01786 R01786]
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00299 R00299]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P0A6V8 P0A6V8]
 
−
** [http://www.uniprot.org/uniprot/P21908 P21908]
 
−
** [http://www.uniprot.org/uniprot/P64254 P64254]
 
−
** [http://www.uniprot.org/uniprot/Q8XDH5 Q8XDH5]
 
−
** [http://www.uniprot.org/uniprot/Q8XDH4 Q8XDH4]
 
−
** [http://www.uniprot.org/uniprot/Q9CE25 Q9CE25]
 
−
** [http://www.uniprot.org/uniprot/P52792 P52792]
 
−
** [http://www.uniprot.org/uniprot/Q9V2Z6 Q9V2Z6]
 
−
** [http://www.uniprot.org/uniprot/Q7M537 Q7M537]
 
−
** [http://www.uniprot.org/uniprot/P17709 P17709]
 
−
** [http://www.uniprot.org/uniprot/Q04409 Q04409]
 
−
** [http://www.uniprot.org/uniprot/Q92407 Q92407]
 
−
** [http://www.uniprot.org/uniprot/O31392 O31392]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=glucokinase}}
+
{{#set: common name=ORF}}
−
{{#set: common name=hexokinase}}
+
{{#set: gene associated=Tiso_gene_12899|Tiso_gene_20236}}
−
{{#set: ec number=EC-2.7.1.1}}
+
{{#set: in pathway=}}
−
{{#set: ec number=EC-2.7.1.2}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: gene associated=Tiso_gene_1303|Tiso_gene_3107}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
−
{{#set: in pathway=PWY-7238|TREDEGLOW-PWY|PWY-621|PWY-7385|GLYCOCAT-PWY|PWY0-1182|P124-PWY|ANAGLYCOLYSIS-PWY|GLUCOSE1PMETAB-PWY|PWY-5514|PWY-2723|P122-PWY|PWY-2722|PWY-5661}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=synechocystis|esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 21:24, 21 March 2018

Reaction RXN-14217

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 dGTP[c] + 1 H2O[c] => 1 H+[c] + 1 phosphate[c] + 1 dGDP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-14217&oldid=48491"