Difference between revisions of "Tiso gene 15790"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=STRICTOSIDINE-SYNTHASE-RXN STRICTOSIDINE-SYNTHASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
 
(Created page with "Category:Gene == Gene Tiso_gene_15790 == * right end position: ** 3937 * transcription direction: ** POSITIVE * left end position: ** 343 * centisome position: ** 7.160751...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=STRICTOSIDINE-SYNTHASE-RXN STRICTOSIDINE-SYNTHASE-RXN] ==
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== Gene Tiso_gene_15790 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 3937
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* common name:
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* transcription direction:
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** strictosidine_synthase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/4.3.3.2 EC-4.3.3.2]
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** 343
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* centisome position:
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** 7.1607513   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[KYNURENINE-3-MONOOXYGENASE-RXN]]
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** 1 [[TRYPTAMINE]][c] '''+''' 1 [[SECOLOGANIN-CPD]][c] '''=>''' 1 [[STRICTOSIDINE]][c] '''+''' 1 [[WATER]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 tryptamine[c] '''+''' 1 secologanin[c] '''=>''' 1 strictosidine[c] '''+''' 1 H2O[c]
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== Pathways associated ==
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* [[PWY-7765]]
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== Genes associated with this reaction  ==
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* [[PWY-5651]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[PWY-6309]]
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* [[Tiso_gene_8473]]
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* [[PWY-7717]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_8474]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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== Pathways ==
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* [[PWY-5290]], secologanin and strictosidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5290 PWY-5290]
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** '''1''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-6326]], camptothecin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6326 PWY-6326]
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** '''1''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[athaliana]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=3937}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15013 15013]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=343}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03738 R03738]
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{{#set: centisome position=7.1607513    }}
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* UNIPROT:
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{{#set: reaction associated=KYNURENINE-3-MONOOXYGENASE-RXN}}
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** [http://www.uniprot.org/uniprot/Q9VAQ9 Q9VAQ9]
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{{#set: pathway associated=PWY-7765|PWY-5651|PWY-6309|PWY-7717}}
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** [http://www.uniprot.org/uniprot/P68175 P68175]
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** [http://www.uniprot.org/uniprot/P18417 P18417]
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** [http://www.uniprot.org/uniprot/P68174 P68174]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=strictosidine_synthase}}
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{{#set: ec number=EC-4.3.3.2}}
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{{#set: gene associated=Tiso_gene_8473|Tiso_gene_8474}}
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{{#set: in pathway=PWY-5290|PWY-6326}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=athaliana}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 21:24, 21 March 2018

Gene Tiso_gene_15790

  • right end position:
    • 3937
  • transcription direction:
    • POSITIVE
  • left end position:
    • 343
  • centisome position:
    • 7.1607513
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_15790&oldid=48513"