Difference between revisions of "RXN-9653"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-546 RXN66-546] == * direction: ** LEFT-TO-RIGHT * common name: ** pyrroline-5-carboxylate_red...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9653 RXN-9653] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** 3-oxoa...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-546 RXN66-546] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9653 RXN-9653] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** pyrroline-5-carboxylate_reductase
+
** polyketide_synthase
−
** ORF
+
** 3-oxoacyl-synthase
−
** ankyrin_repeat-containing_protein
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.5.1.2 EC-1.5.1.2]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PYRROLINE-HYDROXY-CARBOXYLATE]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[4-HYDROXY-L-PROLINE]][c]
+
** 1 [[MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Dodecanoyl-ACPs]][c] '''=>''' 1 [[3-oxo-myristoyl-ACPs]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 (3R,5S)-1-pyrroline-3-hydroxy-5-carboxylate[c] '''+''' 1 NAD(P)H[c] '''+''' 2 H+[c] '''=>''' 1 NAD(P)+[c] '''+''' 1 trans-4-hydroxy-L-proline[c]
+
** 1 malonyl-CoA[c] '''+''' 1 H+[c] '''+''' 1 a dodecanoyl-[acp][c] '''=>''' 1 a 3-oxo-myristoyl-[acp][c] '''+''' 1 coenzyme A[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_19254]]
+
* Gene: [[Tiso_gene_13394]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_17059]]
+
* Gene: [[Tiso_gene_10876]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_8625]]
+
* Gene: [[Tiso_gene_500]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
* Gene: [[Tiso_gene_135]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_20218]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_5939]]
−
***AUTOMATED-NAME-MATCH
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15991]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_19302]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_14485]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_136]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pantograph]]
−
*** [[in-silico_annotation]]
+
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=pyrroline-5-carboxylate_reductase}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: common name=ORF}}
+
{{#set: common name=3-oxoacyl-synthase}}
−
{{#set: common name=ankyrin_repeat-containing_protein}}
+
{{#set: ec number=EC-2.3.1.86}}
−
{{#set: ec number=EC-1.5.1.2}}
+
{{#set: ec number=EC-2.3.1.85}}
−
{{#set: gene associated=Tiso_gene_19254|Tiso_gene_17059|Tiso_gene_8625|Tiso_gene_20218}}
+
{{#set: ec number=EC-2.3.1.41}}
−
{{#set: in pathway=}}
+
{{#set: gene associated=Tiso_gene_13394|Tiso_gene_10876|Tiso_gene_500|Tiso_gene_135|Tiso_gene_5939|Tiso_gene_15991|Tiso_gene_19302|Tiso_gene_14485|Tiso_gene_136}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: in pathway=PWY-5994}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:25, 21 March 2018

Reaction RXN-9653

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-9653&oldid=48567"