Difference between revisions of "Tiso gene 19734"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTDECARBOX-RXN GLUTDECARBOX-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glutamate_dec...")
 
(Created page with "Category:Gene == Gene Tiso_gene_19734 == * right end position: ** 1723 * transcription direction: ** NEGATIVE * left end position: ** 198 * centisome position: ** 9.542169...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTDECARBOX-RXN GLUTDECARBOX-RXN] ==
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== Gene Tiso_gene_19734 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 1723
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* common name:
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* transcription direction:
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** glutamate_decarboxylase_beta
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/4.1.1.15 EC-4.1.1.15]
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** 198
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* centisome position:
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** 9.542169   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ADENYL-KIN-RXN]]
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** 1 [[GLT]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[4-AMINO-BUTYRATE]][c]
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** Source: [[orthology-esiliculosus]]
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* With common name(s):
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* Reaction: [[ATCM]]
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** 1 L-glutamate[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 4-aminobutanoate[c]
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** Source: [[orthology-creinhardtii]]
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* Reaction: [[ATDCM]]
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== Genes associated with this reaction  ==
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** Source: [[orthology-creinhardtii]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-11832]]
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* [[Tiso_gene_9927]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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** Source: [[orthology-athaliana]]
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** [[pantograph]]-[[athaliana]]
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[synechocystis]]
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* Reaction: [[RXN-12002]]
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* [[Tiso_gene_10395]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** Assignment: ec-number
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== Pathways  ==
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** Source: [[orthology-athaliana]]
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* [[PWY0-1305]], L-glutamate degradation IX (via 4-aminobutanoate): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1305 PWY0-1305]
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** Source: [[orthology-esiliculosus]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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** Source: [[orthology-creinhardtii]]
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* [[GLUDEG-I-PWY]], GABA shunt: [http://metacyc.org/META/NEW-IMAGE?object=GLUDEG-I-PWY GLUDEG-I-PWY]
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* Reaction: [[RXN-7913]]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-4321]], L-glutamate degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4321 PWY-4321]
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*** Assignment: ec-number
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** '''4''' reactions found over '''5''' reactions in the full pathway
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** Source: [[orthology-athaliana]]
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== Reconstruction information  ==
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** Source: [[orthology-esiliculosus]]
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* [[orthology]]:
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== Pathways associated ==
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** [[pantograph]]:
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* [[PWY-7219]]
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*** [[creinhardtii]]
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* [[PWY-7205]]
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*** [[synechocystis]]
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* [[PWY-7197]]
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*** [[athaliana]]
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* [[PWY-7176]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=1723}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17785 17785]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=198}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00261 R00261]
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{{#set: centisome position=9.542169    }}
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* UNIPROT:
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{{#set: reaction associated=ADENYL-KIN-RXN|ATCM|ATDCM|RXN-11832|RXN-12002|RXN-7913}}
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** [http://www.uniprot.org/uniprot/P20228 P20228]
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{{#set: pathway associated=PWY-7219|PWY-7205|PWY-7197|PWY-7176}}
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** [http://www.uniprot.org/uniprot/Q05329 Q05329]
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** [http://www.uniprot.org/uniprot/P18088 P18088]
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** [http://www.uniprot.org/uniprot/P14748 P14748]
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** [http://www.uniprot.org/uniprot/Q07346 Q07346]
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** [http://www.uniprot.org/uniprot/Q99259 Q99259]
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** [http://www.uniprot.org/uniprot/P69910 P69910]
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** [http://www.uniprot.org/uniprot/Q9CG20 Q9CG20]
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** [http://www.uniprot.org/uniprot/P48321 P48321]
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** [http://www.uniprot.org/uniprot/P48319 P48319]
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** [http://www.uniprot.org/uniprot/Q05683 Q05683]
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** [http://www.uniprot.org/uniprot/Q24062 Q24062]
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** [http://www.uniprot.org/uniprot/P69908 P69908]
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** [http://www.uniprot.org/uniprot/P48320 P48320]
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** [http://www.uniprot.org/uniprot/Q59956 Q59956]
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** [http://www.uniprot.org/uniprot/P48318 P48318]
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** [http://www.uniprot.org/uniprot/Q49854 Q49854]
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** [http://www.uniprot.org/uniprot/Q49855 Q49855]
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** [http://www.uniprot.org/uniprot/Q49863 Q49863]
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** [http://www.uniprot.org/uniprot/O81101 O81101]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=glutamate_decarboxylase_beta}}
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{{#set: ec number=EC-4.1.1.15}}
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{{#set: gene associated=Tiso_gene_9927|Tiso_gene_10395}}
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{{#set: in pathway=PWY0-1305|GLUDEG-I-PWY|PWY-4321}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|athaliana}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 20:25, 21 March 2018

Gene Tiso_gene_19734

  • right end position:
    • 1723
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 198
  • centisome position:
    • 9.542169
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_19734&oldid=48568"