Difference between revisions of "SAMDECARB-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17796 RXN-17796] == * direction: ** LEFT-TO-RIGHT * common name: ** Acyl-CoA dehydrogenase ** a...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SAMDECARB-RXN SAMDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** s-adenosylmethionin...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17796 RXN-17796] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SAMDECARB-RXN SAMDECARB-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Acyl-CoA dehydrogenase
+
** s-adenosylmethionine_decarboxylase_proenzyme
−
** acyl-_dehydrogenase
+
−
** acyl-CoA_dehydrogenase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.8 EC-1.3.8]
+
** [http://enzyme.expasy.org/EC/4.1.1.50 EC-4.1.1.50]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[CPD-19148]][c] '''+''' 1 [[ETF-Oxidized]][c] '''=>''' 1 [[ETF-Reduced]][c] '''+''' 1 [[CPD-19150]][c]
+
** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[S-ADENOSYLMETHIONINAMINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 (5Z)-dodecenoyl-CoA[c] '''+''' 1 an oxidized electron-transfer flavoprotein[c] '''=>''' 1 a reduced electron-transfer flavoprotein[c] '''+''' 1 (2E,5Z)-dodecenoyl-CoA[c]
+
** 1 S-adenosyl-L-methionine[c] '''+''' 1 H+[c] '''=>''' 1 S-adenosyl 3-(methylthio)propylamine[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_8272]]
+
* Gene: [[Tiso_gene_4269]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_8271]]
+
* Gene: [[Tiso_gene_11030]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_16113]]
+
** Source: [[orthology-athaliana]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_5449]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_6475]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_16631]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[ARGSPECAT-PWY]], spermine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ARGSPECAT-PWY ARGSPECAT-PWY]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=BSUBPOLYAMSYN-PWY BSUBPOLYAMSYN-PWY]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6834]], spermidine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6834 PWY-6834]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-athaliana]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15981 15981]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00178 R00178]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P82184 P82184]
 +
** [http://www.uniprot.org/uniprot/P21182 P21182]
 +
** [http://www.uniprot.org/uniprot/P0A7F6 P0A7F6]
 +
** [http://www.uniprot.org/uniprot/P17707 P17707]
 +
** [http://www.uniprot.org/uniprot/P28918 P28918]
 +
** [http://www.uniprot.org/uniprot/P17708 P17708]
 +
** [http://www.uniprot.org/uniprot/P50243 P50243]
 +
** [http://www.uniprot.org/uniprot/P46255 P46255]
 +
** [http://www.uniprot.org/uniprot/Q04694 Q04694]
 +
** [http://www.uniprot.org/uniprot/Q42679 Q42679]
 +
** [http://www.uniprot.org/uniprot/Q42829 Q42829]
 +
** [http://www.uniprot.org/uniprot/P79888 P79888]
 +
** [http://www.uniprot.org/uniprot/O04009 O04009]
 +
** [http://www.uniprot.org/uniprot/O24575 O24575]
 +
** [http://www.uniprot.org/uniprot/Q43820 Q43820]
 +
** [http://www.uniprot.org/uniprot/Q39676 Q39676]
 +
** [http://www.uniprot.org/uniprot/Q39677 Q39677]
 +
** [http://www.uniprot.org/uniprot/O49972 O49972]
 +
** [http://www.uniprot.org/uniprot/O65354 O65354]
 +
** [http://www.uniprot.org/uniprot/O02655 O02655]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Acyl-CoA dehydrogenase}}
+
{{#set: common name=s-adenosylmethionine_decarboxylase_proenzyme}}
−
{{#set: common name=acyl-_dehydrogenase}}
+
{{#set: ec number=EC-4.1.1.50}}
−
{{#set: common name=acyl-CoA_dehydrogenase}}
+
{{#set: gene associated=Tiso_gene_4269|Tiso_gene_11030}}
−
{{#set: ec number=EC-1.3.8}}
+
{{#set: in pathway=ARGSPECAT-PWY|BSUBPOLYAMSYN-PWY|PWY-6834}}
−
{{#set: gene associated=Tiso_gene_8272|Tiso_gene_8271|Tiso_gene_16113|Tiso_gene_5449|Tiso_gene_6475|Tiso_gene_16631}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: in pathway=}}
+
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Latest revision as of 20:25, 21 March 2018

Reaction SAMDECARB-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • s-adenosylmethionine_decarboxylase_proenzyme
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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