Difference between revisions of "RXN-17799"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEDEHYDR-RXN ACONITATEDEHYDR-RXN] == * direction: ** REVERSIBLE * Synonym(s): == Reaction F...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17799 RXN-17799] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-ketoacyl-_thiolase ** ace...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEDEHYDR-RXN ACONITATEDEHYDR-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17799 RXN-17799] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 +
* common name:
 +
** 3-ketoacyl-_thiolase
 +
** acetyl-_c-acetyltransferase
 +
** thiolase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CIT]][c] '''<=>''' 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c]
+
** 1 [[CO-A]][c] '''+''' 1 [[CPD-19153]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CPD-14925]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 citrate[c] '''<=>''' 1 cis-aconitate[c] '''+''' 1 H2O[c]
+
** 1 coenzyme A[c] '''+''' 1 3-oxo-(5Z)-dodecenoyl-CoA[c] '''=>''' 1 acetyl-CoA[c] '''+''' 1 3-cis-decenoyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_13007]]
+
* Gene: [[Tiso_gene_17451]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3856]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3855]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15327]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10116]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
 
−
** '''5''' reactions found over '''12''' reactions in the full pathway
 
−
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 
−
** '''7''' reactions found over '''12''' reactions in the full pathway
 
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 
−
** '''9''' reactions found over '''16''' reactions in the full pathway
 
−
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 
−
** '''11''' reactions found over '''18''' reactions in the full pathway
 
−
* [[REDCITCYC]], TCA cycle VIII (helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
 
−
** '''7''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-5750]], itaconate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5750 PWY-5750]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
 
−
** '''7''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10228 10228]
+
{{#set: common name=3-ketoacyl-_thiolase}}
−
* PIR:
+
{{#set: common name=acetyl-_c-acetyltransferase}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A35544 A35544]
+
{{#set: common name=thiolase}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44153 A44153]
+
{{#set: ec number=EC-2.3.1.16}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44154 A44154]
+
{{#set: gene associated=Tiso_gene_17451|Tiso_gene_3856|Tiso_gene_3855|Tiso_gene_15327|Tiso_gene_10116}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47184 A47184]
+
{{#set: in pathway=}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81801 A81801]
+
{{#set: reconstruction category=annotation}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B48642 B48642]
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64362 C64362]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64617 C64617]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81356 C81356]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64734 F64734]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F70873 F70873]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64875 G64875]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69599 G69599]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G86708 G86708]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81775 H81775]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17526 S17526]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S18720 S18720]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26403 S26403]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49849 S49849]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S50387 S50387]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57528 S57528]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57805 S57805]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76777 S76777]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04693 T04693]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04820 T04820]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07611 T07611]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10101 T10101]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52543 T52543]
+
−
* LIGAND-RXN:
+
−
** [http://www.genome.jp/dbget-bin/www_bget?R01325 R01325]
+
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P16276 P16276]
+
−
** [http://www.uniprot.org/uniprot/Q01059 Q01059]
+
−
** [http://www.uniprot.org/uniprot/Q9TSA1 Q9TSA1]
+
−
** [http://www.uniprot.org/uniprot/Q9JTI5 Q9JTI5]
+
−
** [http://www.uniprot.org/uniprot/P37032 P37032]
+
−
** [http://www.uniprot.org/uniprot/P81291 P81291]
+
−
** [http://www.uniprot.org/uniprot/Q9PP88 Q9PP88]
+
−
** [http://www.uniprot.org/uniprot/P36683 P36683]
+
−
** [http://www.uniprot.org/uniprot/O53166 O53166]
+
−
** [http://www.uniprot.org/uniprot/P25516 P25516]
+
−
** [http://www.uniprot.org/uniprot/P09339 P09339]
+
−
** [http://www.uniprot.org/uniprot/Q9CHQ5 Q9CHQ5]
+
−
** [http://www.uniprot.org/uniprot/Q9JT05 Q9JT05]
+
−
** [http://www.uniprot.org/uniprot/Q99798 Q99798]
+
−
** [http://www.uniprot.org/uniprot/P28271 P28271]
+
−
** [http://www.uniprot.org/uniprot/P21399 P21399]
+
−
** [http://www.uniprot.org/uniprot/Q42669 Q42669]
+
−
** [http://www.uniprot.org/uniprot/P19414 P19414]
+
−
** [http://www.uniprot.org/uniprot/P20004 P20004]
+
−
** [http://www.uniprot.org/uniprot/P49609 P49609]
+
−
** [http://www.uniprot.org/uniprot/P74582 P74582]
+
−
** [http://www.uniprot.org/uniprot/Q42560 Q42560]
+
−
** [http://www.uniprot.org/uniprot/Q9SZ36 Q9SZ36]
+
−
** [http://www.uniprot.org/uniprot/O04916 O04916]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: gene associated=Tiso_gene_13007}}
+
−
{{#set: in pathway=PWY-5913|GLYOXYLATE-BYPASS|PWY66-398|PWY-5690|PWY-6549|PWY-5392|P23-PWY|P105-PWY|PWY-6969|FERMENTATION-PWY|PWY-6728|REDCITCYC|PWY-7254|PWY-7124|PWY-5750|TCA}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-synechocystis}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 20:25, 21 March 2018

Reaction RXN-17799

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-ketoacyl-_thiolase
    • acetyl-_c-acetyltransferase
    • thiolase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 coenzyme A[c] + 1 3-oxo-(5Z)-dodecenoyl-CoA[c] => 1 acetyl-CoA[c] + 1 3-cis-decenoyl-CoA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-17799&oldid=48629"