Difference between revisions of "R07219"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPKIN-RXN UDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** nucleoside_diphosp...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=R07219 R07219] == * direction: ** LEFT-TO-RIGHT * common name: ** R655 * Synonym(s): == Reaction F...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPKIN-RXN UDPKIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=R07219 R07219] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ORF
+
** R655
−
** nucleoside_diphosphate_kinase
+
−
** adenylate_kinase_domain-containing_protein_1
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[UDP]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[UTP]][c]
+
** 1.0 [[HYDROXY-METHYL-BUTENYL-DIP]][c] '''+''' 1.0 [[NADPH]][c] '''+''' 1.0 [[PROTON]][c] '''=>''' 1.0 [[CPD-4211]][c] '''+''' 1.0 [[WATER]][c] '''+''' 1.0 [[NADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 UDP[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 UTP[c]
+
** 1.0 (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate[c] '''+''' 1.0 NADPH[c] '''+''' 1.0 H+[c] '''=>''' 1.0 dimethylallyl diphosphate[c] '''+''' 1.0 H2O[c] '''+''' 1.0 NADP+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_18224]]
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* Gene: [[Tiso_gene_5609]]
−
** IN-SILICO_ANNOTATION
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** Source: [[orthology-synechocystis]]
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***EC-NUMBER
+
−
* [[Tiso_gene_9290]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17272]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17271]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_195]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_16529]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7176]], UTP and CTP de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7176 PWY-7176]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-synechocystis]]
−
*** [[synechocystis]]
+
*** Tool: [[pantograph]]
−
*** [[athaliana]]
+
−
*** [[esiliculosus]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25098 25098]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00156 R00156]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ORF}}
+
{{#set: common name=R655}}
−
{{#set: common name=nucleoside_diphosphate_kinase}}
+
{{#set: gene associated=Tiso_gene_5609}}
−
{{#set: common name=adenylate_kinase_domain-containing_protein_1}}
+
{{#set: in pathway=}}
−
{{#set: ec number=EC-2.7.4.6}}
+
−
{{#set: gene associated=Tiso_gene_18224|Tiso_gene_9290|Tiso_gene_17272|Tiso_gene_17271|Tiso_gene_195|Tiso_gene_16529}}
+
−
{{#set: in pathway=PWY-7176}}
+
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-synechocystis}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}
−
{{#set: reconstruction source=synechocystis|athaliana|esiliculosus}}
 
−
{{#set: reconstruction category=manual}}
 
−
{{#set: reconstruction source=primary_network}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Latest revision as of 20:25, 21 March 2018

Reaction R07219

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • R655
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1.0 (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate[c] + 1.0 NADPH[c] + 1.0 H+[c] => 1.0 dimethylallyl diphosphate[c] + 1.0 H2O[c] + 1.0 NADP+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=R07219&oldid=48631"