Difference between revisions of "4.1.2.20-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTDECARBOX-RXN GLUTDECARBOX-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glutamate_dec...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.1.2.20-RXN 4.1.2.20-RXN] == * direction: ** REVERSIBLE * common name: ** 2-dehydro-3-deoxyglucara...")
 
(One intermediate revision by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTDECARBOX-RXN GLUTDECARBOX-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.1.2.20-RXN 4.1.2.20-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** glutamate_decarboxylase_beta
+
** 2-dehydro-3-deoxyglucarate_aldolase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.1.15 EC-4.1.1.15]
+
** [http://enzyme.expasy.org/EC/4.1.2.20 EC-4.1.2.20]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GLT]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[4-AMINO-BUTYRATE]][c]
+
** 1 [[2-KETO-3-DEOXY-D-GLUCARATE]][c] '''<=>''' 1 [[PYRUVATE]][c] '''+''' 1 [[TARTRONATE-S-ALD]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-glutamate[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 4-aminobutanoate[c]
+
** 1 (2S,3S)-2,3-dihydroxy-5-oxohexanedioate[c] '''<=>''' 1 pyruvate[c] '''+''' 1 tartronate semialdehyde[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10395]]
+
* Gene: [[Tiso_gene_16237]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_9927]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-1305]], L-glutamate degradation IX (via 4-aminobutanoate): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1305 PWY0-1305]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[GLUDEG-I-PWY]], GABA shunt: [http://metacyc.org/META/NEW-IMAGE?object=GLUDEG-I-PWY GLUDEG-I-PWY]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-4321]], L-glutamate degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4321 PWY-4321]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17785 17785]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10268 10268]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00261 R00261]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03277 R03277]
−
* UNIPROT:
+
{{#set: direction=REVERSIBLE}}
−
** [http://www.uniprot.org/uniprot/P20228 P20228]
+
{{#set: common name=2-dehydro-3-deoxyglucarate_aldolase}}
−
** [http://www.uniprot.org/uniprot/Q05329 Q05329]
+
{{#set: ec number=EC-4.1.2.20}}
−
** [http://www.uniprot.org/uniprot/P18088 P18088]
+
{{#set: gene associated=Tiso_gene_16237}}
−
** [http://www.uniprot.org/uniprot/P14748 P14748]
+
{{#set: in pathway=}}
−
** [http://www.uniprot.org/uniprot/Q07346 Q07346]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/Q99259 Q99259]
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
** [http://www.uniprot.org/uniprot/P69910 P69910]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q9CG20 Q9CG20]
+
−
** [http://www.uniprot.org/uniprot/P48321 P48321]
+
−
** [http://www.uniprot.org/uniprot/P48319 P48319]
+
−
** [http://www.uniprot.org/uniprot/Q05683 Q05683]
+
−
** [http://www.uniprot.org/uniprot/Q24062 Q24062]
+
−
** [http://www.uniprot.org/uniprot/P69908 P69908]
+
−
** [http://www.uniprot.org/uniprot/P48320 P48320]
+
−
** [http://www.uniprot.org/uniprot/Q59956 Q59956]
+
−
** [http://www.uniprot.org/uniprot/P48318 P48318]
+
−
** [http://www.uniprot.org/uniprot/Q49854 Q49854]
+
−
** [http://www.uniprot.org/uniprot/Q49855 Q49855]
+
−
** [http://www.uniprot.org/uniprot/Q49863 Q49863]
+
−
** [http://www.uniprot.org/uniprot/O81101 O81101]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=glutamate_decarboxylase_beta}}
+
−
{{#set: ec number=EC-4.1.1.15}}
+
−
{{#set: gene associated=Tiso_gene_10395|Tiso_gene_9927}}
+
−
{{#set: in pathway=PWY0-1305|GLUDEG-I-PWY|PWY-4321}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=orthology-creinhardtii|orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Latest revision as of 21:25, 21 March 2018

Reaction 4.1.2.20-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • 2-dehydro-3-deoxyglucarate_aldolase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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