Difference between revisions of "Category:Pathway"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SHIKIMATE-5-DEHYDROGENASE-RXN SHIKIMATE-5-DEHYDROGENASE-RXN] == * direction: ** LEFT-TO-RIGHT * com...")
(Created page with "{{#ask: Category:Pathway | ?common name | ?reaction found | ?total reaction | ?completion rate }}")
 
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[[Category:Reaction]]
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{{#ask: [[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SHIKIMATE-5-DEHYDROGENASE-RXN SHIKIMATE-5-DEHYDROGENASE-RXN] ==
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| ?common name
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* direction:
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| ?reaction found
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** LEFT-TO-RIGHT
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| ?total reaction
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* common name:
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| ?completion rate
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** pentafunctional_protein
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}}
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* ec number:
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** [http://enzyme.expasy.org/EC/1.1.1.25 EC-1.1.1.25]
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* Synonym(s):
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== Reaction Formula ==
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* With identifiers:
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** 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[3-DEHYDRO-SHIKIMATE]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[SHIKIMATE]][c]
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* With common name(s):
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** 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 3-dehydroshikimate[c] '''=>''' 1 NADP+[c] '''+''' 1 shikimate[c]
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== Genes associated with this reaction ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_5752]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_5753]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17737 17737]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R02413 R02413]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P07547 P07547]
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** [http://www.uniprot.org/uniprot/P08566 P08566]
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** [http://www.uniprot.org/uniprot/Q58484 Q58484]
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** [http://www.uniprot.org/uniprot/Q9PIA0 Q9PIA0]
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** [http://www.uniprot.org/uniprot/P0A6D5 P0A6D5]
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** [http://www.uniprot.org/uniprot/Q9CES7 Q9CES7]
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** [http://www.uniprot.org/uniprot/Q44606 Q44606]
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** [http://www.uniprot.org/uniprot/Q44608 Q44608]
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** [http://www.uniprot.org/uniprot/Q44609 Q44609]
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** [http://www.uniprot.org/uniprot/Q44610 Q44610]
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** [http://www.uniprot.org/uniprot/Q44611 Q44611]
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** [http://www.uniprot.org/uniprot/Q44612 Q44612]
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** [http://www.uniprot.org/uniprot/P15770 P15770]
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** [http://www.uniprot.org/uniprot/Q42947 Q42947]
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** [http://www.uniprot.org/uniprot/O65917 O65917]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=pentafunctional_protein}}
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{{#set: ec number=EC-1.1.1.25}}
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{{#set: gene associated=Tiso_gene_5752|Tiso_gene_5753}}
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{{#set: in pathway=PWY-6163}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:26, 21 March 2018

 Common nameReaction foundTotal reactionCompletion rate
1CMET2-PWYN10-formyl-tetrahydrofolate biosynthesis
N10-formyl-THF biosynthesis		7978.0
2PHENDEG-PWYPhenylethylamine degradation I22100.0
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY4-hydroxyphenylacetate degradation
4-HPA degradation
Homoprotocatechuate degradation		2825.0
ACETOACETATE-DEG-PWYAcetoacetate degradation (to acetyl CoA)1250.0
ADENOSYLHOMOCYSCAT-PWYL-methionine salvage from L-homocysteine2367.0
ALACAT2-PWYL-alanine degradation II (to D-lactate)2367.0
ALADEG-PWYL-alanine degradation I1250.0
ALANINE-DEG3-PWYL-alanine degradation III11100.0
ALANINE-SYN2-PWYL-alanine biosynthesis II11100.0
ALANINE-VALINESYN-PWYL-alanine biosynthesis I2367.0
ANAGLYCOLYSIS-PWYGlycolysis III (from glucose)
Anaerobic glycolysis
Embden-Meyerhof-Parnas pathway
EMP pathway
Glycolysis III (glucokinase)		1010100.0
ANAPHENOXI-PWYL-phenylalanine degradation II (anaerobic)
Anaerobic L-phenylalanine oxidation		2367.0
ARABCAT-PWYL-arabinose degradation I
L-arabinose catabolism		1333.0
ARG-GLU-PWYL-arginine degradation VII (arginase 3 pathway)22100.0
ARG-PRO-PWYL-arginine degradation VI (arginase 2 pathway)
L-proline biosynthesis from arginine		44100.0
ARGASEDEG-PWYL-arginine degradation I (arginase pathway)
L-arginase degradative pathway
L-glutamate biosynthesis		33100.0
ARGDEG-IV-PWYL-arginine degradation VIII (arginine oxidase pathway)1425.0
ARGDEG-V-PWYL-arginine degradation X (arginine monooxygenase pathway)33100.0
ARGININE-SYN4-PWYL-ornithine biosynthesis II3475.0
ARGSPECAT-PWYSpermine biosynthesis22100.0
ARGSYN-PWYL-arginine biosynthesis I (via L-ornithine)5683.0
ARGSYNBSUB-PWYL-arginine biosynthesis II (acetyl cycle)99100.0
ASPARAGINE-BIOSYNTHESISL-asparagine biosynthesis I11100.0
ASPARAGINE-DEG1-PWYL-asparagine degradation I11100.0
ASPARAGINE-DEG1-PWY-1L-asparagine degradation III (mammalian)2367.0
ASPARAGINESYN-PWYL-asparagine biosynthesis II11100.0
ASPARTATE-DEG1-PWYL-aspartate degradation I11100.0
ASPARTATESYN-PWYL-aspartate biosynthesis
L-aspartate biosynthesis and degradation		11100.0
ASPASN-PWYSuperpathway of L-aspartate and L-asparagine biosynthesis
Interconversion of L-aspartate and L-asparagine		4757.0
BETA-ALA-DEGRADATION-I-PWYΒ-alanine degradation I1250.0
BETSYN-PWYGlycine betaine biosynthesis I (Gram-negative bacteria)22100.0
BGALACT-PWYLactose degradation III
Lactose degradation 3		11100.0
BSUBPOLYAMSYN-PWYSpermidine biosynthesis I
Arginine degradation to spermidine
Spermidine biosynthesis		22100.0
CALVIN-PWYCalvin-Benson-Bassham cycle
Photosynthetic dark reactions
Photosynthetic CO2 fixation
Reductive pentose phosphate pathway
Calvin cycle
Carbon fixation
Calvin-Benson cycle		1313100.0
CATECHOL-ORTHO-CLEAVAGE-PWYCatechol degradation to β-ketoadipate
Catechol degradation, ortho-cleavage		1425.0
CENTBENZCOA-PWYBenzoyl-CoA degradation II (anaerobic)
Central benzoyl-CoA pathway (anaerobic)		2729.0
CENTFERM-PWYPyruvate fermentation to butanoate
Central fermentation pathway
Acetobutylicum fermentation
Pyruvate fermentation to butyrate		3743.0
CHLOROPHYLL-SYN3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent)
Light-dependent aerobic 3,8-divinyl-chlorophyllide a biosynthesis I		99100.0
CHOLINE-BETAINE-ANA-PWYCholine degradation I
Choline betaine anabolism		22100.0
CITRULBIO-PWYL-citrulline biosynthesis88100.0
CITRULLINE-DEG-PWYL-citrulline degradation22100.0
COA-PWYCoenzyme A biosynthesis I
CoA biosynthesis		44100.0
COA-PWY-1Coenzyme A biosynthesis II (mammalian)
CoA biosynthesis		55100.0
COBALSYN-PWYAdenosylcobalamin salvage from cobinamide I
Vitamin B12 biosynthesis		2633.0
CODH-PWYReductive acetyl coenzyme A pathway I (homoacetogenic bacteria)
Wood pathway
Acetate synthesis
Acetyl-CoA pathway
Carbon monoxide dehydrogenase pathway
Carbon fixation
CO2 fixation
Ljungdahl-Wood pathway
Wood-Ljungdahl pathway
Reductive acetyl CoA pathway		5956.0
COLANSYN-PWYColanic acid building blocks biosynthesis51145.0
CRNFORCAT-PWYCreatinine degradation I
Creatinine catabolism		2450.0
CYANCAT-PWYCyanate degradation
Cyanate catabolism		33100.0
CYCLOHEXANOL-OXIDATION-PWYCyclohexanol degradation1520.0
CYSTEINE-DEG-PWYL-cysteine degradation I
Cysteine degradation I		2367.0
... further results

Pages in category "Pathway"

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