Difference between revisions of "MediaWiki:Sidebar"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.2.17-RXN 3.5.2.17-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 5-hydroxyisourate_hyd...")
(Created page with "* navigation ** mainpage|mainpage-description ** workflow|workflow command history ** randompage-url|randompage ** Special:ListFiles|Files * Metabolic network components ** Ca...")
 
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[[Category:Reaction]]
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* navigation
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.2.17-RXN 3.5.2.17-RXN] ==
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** mainpage|mainpage-description
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* direction:
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** workflow|workflow command history
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** LEFT-TO-RIGHT
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** randompage-url|randompage
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* common name:
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** Special:ListFiles|Files
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** 5-hydroxyisourate_hydrolase
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* Metabolic network components
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* ec number:
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** Category:Reaction|Reaction
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** [http://enzyme.expasy.org/EC/3.5.2.17 EC-3.5.2.17]
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** Category:Gene|Gene
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* Synonym(s):
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** Category:Pathway|Pathway
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** Category:Metabolite|Metabolite
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== Reaction Formula ==
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* Reconstruction categories
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* With identifiers:
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** annotation|annotation
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** 1 [[5-HYDROXYISOURATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-5821]][c] '''+''' 1 [[PROTON]][c]
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** gap-filling|gap-filling
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* With common name(s):
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** manual|manual
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** 1 5-hydroxyisourate[c] '''+''' 1 H2O[c] '''=>''' 1 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline[c] '''+''' 1 H+[c]
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** orthology|orthology
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* Reconstruction tools
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== Genes associated with this reaction  ==
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** meneco|meneco
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Genes have been associated with this reaction based on different elements listed below.
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** pantograph|pantograph
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* [[Tiso_gene_13181]]
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** pathwaytools|pathwaytools
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** IN-SILICO_ANNOTATION
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* Reconstruction sources
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***AUTOMATED-NAME-MATCH
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** annotation-experimental_annotation|annotation-experimental_annotation
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** [[pantograph]]-[[creinhardtii]]
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** annotation-in-silico_annotation|annotation-in-silico_annotation
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== Pathways  ==
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** gap-filling-gapfilling_solution_with_meneco_draft_medium|gap-filling-gapfilling_solution_with_meneco_draft_medium
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* [[PWY-7394]], urate degradation to allantoin II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7394 PWY-7394]
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** manual-export_biomass_rxn|manual-export_biomass_rxn
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** '''2''' reactions found over '''3''' reactions in the full pathway
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** manual-import_from_medium|manual-import_from_medium
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* [[PWY-5691]], urate degradation to allantoin I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5691 PWY-5691]
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** manual-primary_network|manual-primary_network
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** '''2''' reactions found over '''3''' reactions in the full pathway
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** manual-reactions_pwy-6475_tiso_add|manual-reactions_pwy-6475_tiso_add
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== Reconstruction information  ==
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** orthology-athaliana|orthology-athaliana
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* Category: [[orthology]]
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** orthology-creinhardtii|orthology-creinhardtii
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** Source: [[orthology-creinhardtii]]
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** orthology-esiliculosus|orthology-esiliculosus
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*** Tool: [[pantograph]]
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** orthology-synechocystis|orthology-synechocystis
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23736 23736]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R06601 R06601]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=5-hydroxyisourate_hydrolase}}
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{{#set: ec number=EC-3.5.2.17}}
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{{#set: gene associated=Tiso_gene_13181}}
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{{#set: in pathway=PWY-7394|PWY-5691}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Latest revision as of 20:26, 21 March 2018

  • navigation
    • mainpage|mainpage-description
    • workflow|workflow command history
    • randompage-url|randompage
    • Special:ListFiles|Files
  • Metabolic network components
    • Category:Reaction|Reaction
    • Category:Gene|Gene
    • Category:Pathway|Pathway
    • Category:Metabolite|Metabolite
  • Reconstruction categories
    • annotation|annotation
    • gap-filling|gap-filling
    • manual|manual
    • orthology|orthology
  • Reconstruction tools
    • meneco|meneco
    • pantograph|pantograph
    • pathwaytools|pathwaytools
  • Reconstruction sources
    • annotation-experimental_annotation|annotation-experimental_annotation
    • annotation-in-silico_annotation|annotation-in-silico_annotation
    • gap-filling-gapfilling_solution_with_meneco_draft_medium|gap-filling-gapfilling_solution_with_meneco_draft_medium
    • manual-export_biomass_rxn|manual-export_biomass_rxn
    • manual-import_from_medium|manual-import_from_medium
    • manual-primary_network|manual-primary_network
    • manual-reactions_pwy-6475_tiso_add|manual-reactions_pwy-6475_tiso_add
    • orthology-athaliana|orthology-athaliana
    • orthology-creinhardtii|orthology-creinhardtii
    • orthology-esiliculosus|orthology-esiliculosus
    • orthology-synechocystis|orthology-synechocystis
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