Difference between revisions of "PWY66-373"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-C-PALMITOYLTRANSFERASE-RXN SERINE-C-PALMITOYLTRANSFERASE-RXN] == * direction: ** LEFT-TO-RIG...")
 
(Created page with "Category:Gene == Gene Tiso_gene_7719 == * left end position: ** 2025 * transcription direction: ** POSITIVE * right end position: ** 5158 * centisome position: ** 18.62069...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SERINE-C-PALMITOYLTRANSFERASE-RXN SERINE-C-PALMITOYLTRANSFERASE-RXN] ==
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== Gene Tiso_gene_7719 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 2025
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* common name:
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* transcription direction:
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** serine_palmitoyltransferase
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/2.3.1.50 EC-2.3.1.50]
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** 5158
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* centisome position:
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** 18.62069   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[RXN-15556]]
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** 1 [[PROTON]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[PALMITYL-COA]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DEHYDROSPHINGANINE]][c] '''+''' 1 [[CO-A]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 H+[c] '''+''' 1 L-serine[c] '''+''' 1 palmitoyl-CoA[c] '''=>''' 1 CO2[c] '''+''' 1 3-dehydrosphinganine[c] '''+''' 1 coenzyme A[c]
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* [[UBIQUITIN--PROTEIN-LIGASE-RXN]]
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** in-silico_annotation
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== Genes associated with this reaction  ==
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***ec-number
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Genes have been associated with this reaction based on different elements listed below.
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== Pathways associated ==
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* [[Tiso_gene_10992]]
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* [[PWY-7511]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-5129]], sphingolipid biosynthesis (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5129 PWY-5129]
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** '''3''' reactions found over '''13''' reactions in the full pathway
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* [[PWY3DJ-12]], ceramide de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY3DJ-12 PWY3DJ-12]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[SPHINGOLIPID-SYN-PWY]], sphingolipid biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=SPHINGOLIPID-SYN-PWY SPHINGOLIPID-SYN-PWY]
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** '''2''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=2025}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14761 14761]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=5158}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01281 R01281]
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{{#set: centisome position=18.62069    }}
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* UNIPROT:
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{{#set: reaction associated=RXN-15556|UBIQUITIN--PROTEIN-LIGASE-RXN}}
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** [http://www.uniprot.org/uniprot/P25045 P25045]
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{{#set: pathway associated=PWY-7511}}
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** [http://www.uniprot.org/uniprot/O15270 O15270]
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** [http://www.uniprot.org/uniprot/P48241 P48241]
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** [http://www.uniprot.org/uniprot/Q09925 Q09925]
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** [http://www.uniprot.org/uniprot/P40970 P40970]
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** [http://www.uniprot.org/uniprot/Q9XVI6 Q9XVI6]
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** [http://www.uniprot.org/uniprot/Q20375 Q20375]
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** [http://www.uniprot.org/uniprot/Q9M304 Q9M304]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=serine_palmitoyltransferase}}
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{{#set: ec number=EC-2.3.1.50}}
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{{#set: gene associated=Tiso_gene_10992}}
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{{#set: in pathway=PWY-5129|PWY3DJ-12|SPHINGOLIPID-SYN-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus|athaliana}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 16:34, 10 January 2018

Gene Tiso_gene_7719

  • left end position:
    • 2025
  • transcription direction:
    • POSITIVE
  • right end position:
    • 5158
  • centisome position:
    • 18.62069
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY66-373&oldid=9607"