Difference between revisions of "CPD0-1065"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11245 RXN-11245] == * direction: ** LEFT-TO-RIGHT * common name: ** hydroxyacyl-coenzyme_a_dehy...")
 
(Created page with "Category:Gene == Gene Tiso_gene_16970 == * left end position: ** 1211 * transcription direction: ** POSITIVE * right end position: ** 3937 * centisome position: ** 30.2674...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11245 RXN-11245] ==
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== Gene Tiso_gene_16970 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 1211
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* common name:
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* transcription direction:
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** hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit
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** POSITIVE
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** 3-hydroxyacyl-_dehydrogenase
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* right end position:
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** hydroxyacyl-coenzyme_a_mitochondrial
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** 3937
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
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** 30.267433   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[1.1.1.271-RXN]]
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** 1 [[NAD]][c] '''+''' 1 [[CPD-12199]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-10600]][c]
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** experimental_annotation
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* With common name(s):
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***automated-name-match
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** 1 NAD+[c] '''+''' 1 3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA[c] '''=>''' 1 NADH[c] '''+''' 1 H+[c] '''+''' 1 4-hydroxybenzoyl-acetyl-CoA[c]
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** [[pantograph]]-[[athaliana]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_5857]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_18838]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_14027]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_14026]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_18839]]
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== Pathways associated ==
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** IN-SILICO_ANNOTATION
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* [[PWY-66]]
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***EC-NUMBER
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* [[Tiso_gene_14262]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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== Pathways ==
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* [[PWY-6435]], 4-hydroxybenzoate biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6435 PWY-6435]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=1211}}
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{{#set: common name=hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=3-hydroxyacyl-_dehydrogenase}}
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{{#set: right end position=3937}}
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{{#set: common name=hydroxyacyl-coenzyme_a_mitochondrial}}
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{{#set: centisome position=30.267433    }}
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{{#set: ec number=EC-1.1.1.35}}
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{{#set: reaction associated=1.1.1.271-RXN}}
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{{#set: gene associated=Tiso_gene_5857|Tiso_gene_18838|Tiso_gene_14027|Tiso_gene_14026|Tiso_gene_18839|Tiso_gene_14262}}
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{{#set: pathway associated=PWY-66}}
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{{#set: in pathway=PWY-6435}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 16:37, 10 January 2018

Gene Tiso_gene_16970

  • left end position:
    • 1211
  • transcription direction:
    • POSITIVE
  • right end position:
    • 3937
  • centisome position:
    • 30.267433
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD0-1065&oldid=9764"