Difference between revisions of "Tiso gene 5675"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINE SPERMIDINE] == * smiles: ** C([N+])CC[N+]CCCC[N+] * inchi key: ** InChIKey=ATHGHQPFG...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9651 RXN-9651] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** 3-oxoa...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SPERMIDINE SPERMIDINE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9651 RXN-9651] ==
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* smiles:
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* direction:
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** C([N+])CC[N+]CCCC[N+]
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=ATHGHQPFGPMSJY-UHFFFAOYSA-Q
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* common name:
 
* common name:
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** spermidine
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** polyketide_synthase
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* molecular weight:
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** 3-oxoacyl-synthase
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** 148.271   
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
 
* Synonym(s):
 
* Synonym(s):
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** N-(3-aminopropyl)butane-1,4-diamine
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[SPERMINE-SYNTHASE-RXN]]
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* With identifiers:
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* [[SPMDtmi]]
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** 1 [[PROTON]][c] '''+''' 1 [[Octanoyl-ACPs]][c] '''+''' 1 [[MALONYL-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[3-oxo-decanoyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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* [[RXN-13414]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 1 H+[c] '''+''' 1 an octanoyl-[acp][c] '''+''' 1 malonyl-CoA[c] '''=>''' 1 coenzyme A[c] '''+''' 1 a 3-oxo-decanoyl-[acp][c] '''+''' 1 CO2[c]
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* [[APAPT]]
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* [[SPMDtmi]]
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== Genes associated with this reaction  ==
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== Reaction(s) of unknown directionality ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[SPERMIDINESYN-RXN]]
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* [[Tiso_gene_136]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_15991]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_500]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_5939]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_14485]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_19302]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_135]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
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* CAS : 124-20-9
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{{#set: direction=LEFT-TO-RIGHT}}
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* METABOLIGHTS : MTBLC57834
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{{#set: common name=polyketide_synthase}}
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* PUBCHEM:
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{{#set: common name=3-oxoacyl-synthase}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=6992097 6992097]
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{{#set: ec number=EC-2.3.1.86}}
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* HMDB : HMDB01257
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{{#set: ec number=EC-2.3.1.85}}
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* LIGAND-CPD:
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{{#set: ec number=EC-2.3.1.41}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00315 C00315]
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{{#set: gene associated=Tiso_gene_136|Tiso_gene_15991|Tiso_gene_10876|Tiso_gene_500|Tiso_gene_13394|Tiso_gene_5939|Tiso_gene_14485|Tiso_gene_19302|Tiso_gene_135}}
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* CHEMSPIDER:
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{{#set: in pathway=PWY-5994}}
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** [http://www.chemspider.com/Chemical-Structure.5360248.html 5360248]
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{{#set: reconstruction category=orthology}}
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* CHEBI:
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{{#set: reconstruction tool=pantograph}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57834 57834]
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{{#set: reconstruction source=esiliculosus}}
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* BIGG : spmd
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{{#set: reconstruction category=annotation}}
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{{#set: smiles=C([N+])CC[N+]CCCC[N+]}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: inchi key=InChIKey=ATHGHQPFGPMSJY-UHFFFAOYSA-Q}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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{{#set: common name=spermidine}}
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{{#set: molecular weight=148.271    }}
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{{#set: common name=N-(3-aminopropyl)butane-1,4-diamine}}
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{{#set: consumed by=SPERMINE-SYNTHASE-RXN|SPMDtmi|RXN-13414}}
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{{#set: produced by=APAPT|SPMDtmi}}
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{{#set: consumed or produced by=SPERMIDINESYN-RXN}}
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Revision as of 16:40, 10 January 2018

Reaction RXN-9651

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5675&oldid=9992"