Difference between revisions of "HISTIDINE--TRNA-LIGASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSINE--TRNA-LIGASE-RXN LYSINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: **...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTIDINE--TRNA-LIGASE-RXN HISTIDINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSINE--TRNA-LIGASE-RXN LYSINE--TRNA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTIDINE--TRNA-LIGASE-RXN HISTIDINE--TRNA-LIGASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** lysine--trna_ligase
+
** histidyl-trna_synthetase_(c-terminal_region)_histidyl-trna_synthetase_(n-terminal_region)
 +
** ORF
 +
** atp-dependent_rna_helicase_dhx30-like
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.1.1.6 EC-6.1.1.6]
+
** [http://enzyme.expasy.org/EC/6.1.1.21 EC-6.1.1.21]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[LYS]][c] '''+''' 1 [[LYS-tRNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Charged-LYS-tRNAs]][c]
+
** 1 [[HIS-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[HIS]][c] '''=>''' 1 [[Charged-HIS-tRNAs]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-lysine[c] '''+''' 1 a tRNAlys[c] '''+''' 1 ATP[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 an L-lysyl-[tRNAlys][c]
+
** 1 a tRNAhis[c] '''+''' 1 ATP[c] '''+''' 1 L-histidine[c] '''=>''' 1 an L-histidyl-[tRNAhis][c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_16635]]
+
* Gene: [[Tiso_gene_12634]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_6705]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_8798]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13414]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 
** '''21''' reactions found over '''21''' reactions in the full pathway
 
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pathwaytools]]
−
*** [[in-silico_annotation]]
+
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17313 17313]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03658 R03658]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03655 R03655]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P41258 P41258]
+
** [http://www.uniprot.org/uniprot/Q9X0H5 Q9X0H5]
−
** [http://www.uniprot.org/uniprot/P46861 P46861]
+
** [http://www.uniprot.org/uniprot/O58028 O58028]
−
** [http://www.uniprot.org/uniprot/P47382 P47382]
+
** [http://www.uniprot.org/uniprot/O67223 O67223]
−
** [http://www.uniprot.org/uniprot/O57963 O57963]
+
** [http://www.uniprot.org/uniprot/Q9ZK27 Q9ZK27]
−
** [http://www.uniprot.org/uniprot/O51603 O51603]
+
** [http://www.uniprot.org/uniprot/Q9PPF4 Q9PPF4]
−
** [http://www.uniprot.org/uniprot/Q9JTT7 Q9JTT7]
+
** [http://www.uniprot.org/uniprot/P56455 P56455]
−
** [http://www.uniprot.org/uniprot/O83650 O83650]
+
** [http://www.uniprot.org/uniprot/Q58406 Q58406]
−
** [http://www.uniprot.org/uniprot/Q9X231 Q9X231]
+
** [http://www.uniprot.org/uniprot/O32039 O32039]
−
** [http://www.uniprot.org/uniprot/P43825 P43825]
+
** [http://www.uniprot.org/uniprot/O51160 O51160]
−
** [http://www.uniprot.org/uniprot/Q9ZDF8 Q9ZDF8]
+
** [http://www.uniprot.org/uniprot/O66522 O66522]
−
** [http://www.uniprot.org/uniprot/O84786 O84786]
+
** [http://www.uniprot.org/uniprot/Q9ZDL9 Q9ZDL9]
−
** [http://www.uniprot.org/uniprot/Q9Z6X5 Q9Z6X5]
+
** [http://www.uniprot.org/uniprot/Q9JUZ9 Q9JUZ9]
−
** [http://www.uniprot.org/uniprot/Q9CII7 Q9CII7]
+
** [http://www.uniprot.org/uniprot/Q9CE78 Q9CE78]
−
** [http://www.uniprot.org/uniprot/P56126 P56126]
+
** [http://www.uniprot.org/uniprot/P47281 P47281]
−
** [http://www.uniprot.org/uniprot/Q9ZMP8 Q9ZMP8]
+
** [http://www.uniprot.org/uniprot/O34459 O34459]
−
** [http://www.uniprot.org/uniprot/O67258 O67258]
+
** [http://www.uniprot.org/uniprot/O83647 O83647]
−
** [http://www.uniprot.org/uniprot/O84002 O84002]
+
** [http://www.uniprot.org/uniprot/O84547 O84547]
−
** [http://www.uniprot.org/uniprot/Q9RHV9 Q9RHV9]
+
** [http://www.uniprot.org/uniprot/Q9Z7P1 Q9Z7P1]
−
** [http://www.uniprot.org/uniprot/P32048 P32048]
+
** [http://www.uniprot.org/uniprot/P43823 P43823]
−
** [http://www.uniprot.org/uniprot/P37879 P37879]
+
** [http://www.uniprot.org/uniprot/Q61035 Q61035]
−
** [http://www.uniprot.org/uniprot/Q48986 Q48986]
+
** [http://www.uniprot.org/uniprot/P30053 P30053]
−
** [http://www.uniprot.org/uniprot/P0A8N7 P0A8N7]
+
** [http://www.uniprot.org/uniprot/P46696 P46696]
−
** [http://www.uniprot.org/uniprot/P37477 P37477]
+
** [http://www.uniprot.org/uniprot/P51348 P51348]
−
** [http://www.uniprot.org/uniprot/P75500 P75500]
+
** [http://www.uniprot.org/uniprot/P75069 P75069]
−
** [http://www.uniprot.org/uniprot/P95970 P95970]
+
** [http://www.uniprot.org/uniprot/Q55653 Q55653]
−
** [http://www.uniprot.org/uniprot/P73443 P73443]
+
** [http://www.uniprot.org/uniprot/Q49027 Q49027]
−
** [http://www.uniprot.org/uniprot/P15180 P15180]
+
** [http://www.uniprot.org/uniprot/P07263 P07263]
−
** [http://www.uniprot.org/uniprot/P0A8N3 P0A8N3]
+
** [http://www.uniprot.org/uniprot/P60906 P60906]
−
** [http://www.uniprot.org/uniprot/P0A8N5 P0A8N5]
+
** [http://www.uniprot.org/uniprot/P12081 P12081]
−
** [http://www.uniprot.org/uniprot/Q43776 Q43776]
+
** [http://www.uniprot.org/uniprot/P93422 P93422]
−
** [http://www.uniprot.org/uniprot/O74059 O74059]
+
** [http://www.uniprot.org/uniprot/O82413 O82413]
−
** [http://www.uniprot.org/uniprot/O30522 O30522]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=lysine--trna_ligase}}
+
{{#set: common name=histidyl-trna_synthetase_(c-terminal_region)_histidyl-trna_synthetase_(n-terminal_region)}}
−
{{#set: ec number=EC-6.1.1.6}}
+
{{#set: common name=ORF}}
−
{{#set: gene associated=Tiso_gene_16635|Tiso_gene_6705}}
+
{{#set: common name=atp-dependent_rna_helicase_dhx30-like}}
 +
{{#set: ec number=EC-6.1.1.21}}
 +
{{#set: gene associated=Tiso_gene_12634|Tiso_gene_8798|Tiso_gene_13414}}
 
{{#set: in pathway=TRNA-CHARGING-PWY}}
 
{{#set: in pathway=TRNA-CHARGING-PWY}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 19:09, 21 March 2018

Reaction HISTIDINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • histidyl-trna_synthetase_(c-terminal_region)_histidyl-trna_synthetase_(n-terminal_region)
    • ORF
    • atp-dependent_rna_helicase_dhx30-like
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a tRNAhis[c] + 1 ATP[c] + 1 L-histidine[c] => 1 an L-histidyl-[tRNAhis][c] + 1 AMP[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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