Difference between revisions of "PWY-3661"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREDEHYD-RXN THREDEHYD-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** threonine_mitochond...")
 
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661 PWY-3661] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREDEHYD-RXN THREDEHYD-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661 PWY-3661] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** threonine_mitochondrial
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** glycine betaine degradation I
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** ORF
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** serine_racemase
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* ec number:
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** [http://enzyme.expasy.org/EC/4.3.1.19 EC-4.3.1.19]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''4''' reactions found over '''7''' reactions in the full pathway
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** 1 [[THR]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[2-OXOBUTANOATE]][c]
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* [[DIMETHYLGLYCINE-DEHYDROGENASE-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 L-threonine[c] '''=>''' 1 ammonium[c] '''+''' 1 2-oxobutanoate[c]
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*** [[Tiso_gene_2717]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[GLYOHMETRANS-RXN]]
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* [[Tiso_gene_8525]]
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** 4 associated gene(s):
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_16153]]
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***EC-NUMBER
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*** [[Tiso_gene_7776]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_18652]]
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* [[Tiso_gene_17207]]
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*** [[Tiso_gene_16154]]
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** IN-SILICO_ANNOTATION
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** 4 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[annotation-experimental_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** [[manual-primary_network]]
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***EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_12535]]
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*** [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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* [[RXN-15124]]
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***EC-NUMBER
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** 0 associated gene:
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** EXPERIMENTAL_ANNOTATION
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** 2 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[annotation-experimental_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[synechocystis]]
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* [[RXN-15127]]
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** [[pantograph]]-[[esiliculosus]]
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** 0 associated gene:
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** [[pantograph]]-[[creinhardtii]]
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** 2 reconstruction source(s) associated:
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== Pathways  ==
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*** [[annotation-experimental_annotation]]
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* [[PWY66-428]], L-threonine degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-428 PWY66-428]
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*** [[annotation-in-silico_annotation]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reaction(s) not found ==
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== Reconstruction information  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.5-RXN 2.1.1.5-RXN]
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* [[orthology]]:
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15125 RXN-15125]
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** [[pantograph]]:
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* [http://metacyc.org/META/NEW-IMAGE?object=SARCOX-RXN SARCOX-RXN]
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2759}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22108 22108]
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{{#set: taxonomic range=TAX-2157}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00996 R00996]
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{{#set: common name=glycine betaine degradation I}}
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* UNIPROT:
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{{#set: reaction found=4}}
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** [http://www.uniprot.org/uniprot/P25306 P25306]
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{{#set: total reaction=7}}
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** [http://www.uniprot.org/uniprot/Q04513 Q04513]
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{{#set: completion rate=57.0}}
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** [http://www.uniprot.org/uniprot/P37946 P37946]
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** [http://www.uniprot.org/uniprot/Q9JZW1 Q9JZW1]
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** [http://www.uniprot.org/uniprot/Q02145 Q02145]
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** [http://www.uniprot.org/uniprot/P66897 P66897]
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** [http://www.uniprot.org/uniprot/Q9WYJ1 Q9WYJ1]
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** [http://www.uniprot.org/uniprot/Q9PP95 Q9PP95]
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** [http://www.uniprot.org/uniprot/P25379 P25379]
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** [http://www.uniprot.org/uniprot/P00927 P00927]
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** [http://www.uniprot.org/uniprot/P20506 P20506]
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** [http://www.uniprot.org/uniprot/P0AGF6 P0AGF6]
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** [http://www.uniprot.org/uniprot/P04968 P04968]
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** [http://www.uniprot.org/uniprot/P20132 P20132]
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** [http://www.uniprot.org/uniprot/P09367 P09367]
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** [http://www.uniprot.org/uniprot/Q9RWU8 Q9RWU8]
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** [http://www.uniprot.org/uniprot/Q9JUX5 Q9JUX5]
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** [http://www.uniprot.org/uniprot/Q9ZD93 Q9ZD93]
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** [http://www.uniprot.org/uniprot/P31212 P31212]
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** [http://www.uniprot.org/uniprot/P36007 P36007]
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** [http://www.uniprot.org/uniprot/P73375 P73375]
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** [http://www.uniprot.org/uniprot/Q9T0D1 Q9T0D1]
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** [http://www.uniprot.org/uniprot/Q39469 Q39469]
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** [http://www.uniprot.org/uniprot/Q93968 Q93968]
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** [http://www.uniprot.org/uniprot/Q9XAA4 Q9XAA4]
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** [http://www.uniprot.org/uniprot/O94634 O94634]
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** [http://www.uniprot.org/uniprot/O59791 O59791]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=threonine_mitochondrial}}
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{{#set: common name=ORF}}
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{{#set: common name=serine_racemase}}
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{{#set: ec number=EC-4.3.1.19}}
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{{#set: gene associated=Tiso_gene_8525|Tiso_gene_17207|Tiso_gene_12535}}
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{{#set: in pathway=PWY66-428}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:13, 21 March 2018

Pathway PWY-3661

Reaction(s) found

4 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-3661&oldid=40270"