Difference between revisions of "RXN-7985"
From metabolic_network
(Created page with "Category:Gene == Gene Tiso_gene_2229 == * left end position: ** 17079 * transcription direction: ** NEGATIVE * right end position: ** 18928 * centisome position: ** 85.101...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7985 RXN-7985] == * direction: ** LEFT-TO-RIGHT * common name: ** violaxanthin de-epoxidase **...") |
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| − | [[Category: | + | [[Category:Reaction]] |
| − | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7985 RXN-7985] == |
| − | * | + | * direction: |
| − | ** | + | ** LEFT-TO-RIGHT |
| − | * | + | * common name: |
| − | ** | + | ** violaxanthin de-epoxidase |
| − | * | + | ** violaxanthin_de-_chloroplast |
| − | * | + | ** violaxanthin_de-epoxidase |
| − | * | + | |
| − | * | + | |
* Synonym(s): | * Synonym(s): | ||
| + | ** VDE | ||
| − | == | + | == Reaction Formula == |
| − | * [[ | + | * With identifiers: |
| − | ** in-silico_annotation | + | ** 1 [[ASCORBATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD1F-131]][c] '''=>''' 1 [[L-DEHYDRO-ASCORBATE]][c] '''+''' 1 [[CPD1F-130]][c] '''+''' 1 [[WATER]][c] |
| − | *** | + | * With common name(s): |
| − | ** [[ | + | ** 1 L-ascorbate[c] '''+''' 1 H+[c] '''+''' 1 antheraxanthin[c] '''=>''' 1 L-dehydro-ascorbate[c] '''+''' 1 zeaxanthin[c] '''+''' 1 H2O[c] |
| − | == Pathways | + | |
| − | * [[PWY- | + | == Genes associated with this reaction == |
| + | Genes have been associated with this reaction based on different elements listed below. | ||
| + | * Gene: [[Tiso_gene_5666]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Assignment: EC-NUMBER | ||
| + | ** Source: [[orthology-esiliculosus]] | ||
| + | * Gene: [[Tiso_gene_1275]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Assignment: EC-NUMBER | ||
| + | * Gene: [[Tiso_gene_16523]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Assignment: EC-NUMBER | ||
| + | == Pathways == | ||
| + | * [[PWY-5945]], zeaxanthin, antheraxanthin and violaxanthin interconversion: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5945 PWY-5945] | ||
| + | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
| + | == Reconstruction information == | ||
| + | * Category: [[orthology]] | ||
| + | ** Source: [[orthology-esiliculosus]] | ||
| + | *** Tool: [[pantograph]] | ||
| + | * Category: [[annotation]] | ||
| + | ** Source: [[annotation-in-silico_annotation]] | ||
| + | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
| − | {{#set: | + | * RHEA: |
| − | {{#set: | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21800 21800] |
| − | {{#set: | + | * LIGAND-RXN: |
| − | {{#set: | + | ** [http://www.genome.jp/dbget-bin/www_bget?R07179 R07179] |
| − | {{#set: | + | {{#set: direction=LEFT-TO-RIGHT}} |
| − | {{#set: pathway | + | {{#set: common name=violaxanthin de-epoxidase}} |
| + | {{#set: common name=violaxanthin_de-_chloroplast}} | ||
| + | {{#set: common name=violaxanthin_de-epoxidase}} | ||
| + | {{#set: common name=VDE}} | ||
| + | {{#set: gene associated=Tiso_gene_5666|Tiso_gene_1275|Tiso_gene_16523}} | ||
| + | {{#set: in pathway=PWY-5945}} | ||
| + | {{#set: reconstruction category=orthology|annotation}} | ||
| + | {{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}} | ||
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
Latest revision as of 19:10, 21 March 2018
Contents
Reaction RXN-7985
- direction:
- LEFT-TO-RIGHT
- common name:
- violaxanthin de-epoxidase
- violaxanthin_de-_chloroplast
- violaxanthin_de-epoxidase
- Synonym(s):
- VDE
Reaction Formula
- With identifiers:
- With common name(s):
- 1 L-ascorbate[c] + 1 H+[c] + 1 antheraxanthin[c] => 1 L-dehydro-ascorbate[c] + 1 zeaxanthin[c] + 1 H2O[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_5666
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: orthology-esiliculosus
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_1275
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_16523
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
Pathways
- PWY-5945, zeaxanthin, antheraxanthin and violaxanthin interconversion: PWY-5945
- 4 reactions found over 4 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-esiliculosus
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links
