Difference between revisions of "PWY-5410"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPGLUCEPIM-RXN UDPGLUCEPIM-RXN] == * direction: ** REVERSIBLE * common name: ** udp-glucose_4-epim...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5410 PWY-5410] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-31...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPGLUCEPIM-RXN UDPGLUCEPIM-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5410 PWY-5410] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-3193]
 
* common name:
 
* common name:
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** udp-glucose_4-epimerase_5
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** traumatin and (Z)-3-hexen-1-yl acetate biosynthesis
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** udp-glucose_4-epimerase
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* ec number:
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** [http://enzyme.expasy.org/EC/5.1.3.2 EC-5.1.3.2]
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* Synonym(s):
 
* Synonym(s):
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** 13-lipoxygenase and 13-hydroperoxide lyase pathway
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** 13-LOX and 13-HPL pathway
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''9''' reactions in the full pathway
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** 1 [[CPD-12575]][c] '''<=>''' 1 [[CPD-14553]][c]
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* [[RXN-1321]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 UDP-&alpha;-D-glucose[c] '''<=>''' 1 UDP-&alpha;-D-galactose[c]
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*** [[Tiso_gene_4463]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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== Reaction(s) not found ==
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* [[Tiso_gene_3236]]
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* [http://metacyc.org/META/NEW-IMAGE?object=HYDROHEX-RXN HYDROHEX-RXN]
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** IN-SILICO_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=LIPOXYGENASE-RXN LIPOXYGENASE-RXN]
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***AUTOMATED-NAME-MATCH
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11852 RXN-11852]
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** [[pantograph]]-[[synechocystis]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-12299 RXN-12299]
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** [[pantograph]]-[[esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1345 RXN-1345]
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* [[Tiso_gene_9823]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1346 RXN-1346]
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** IN-SILICO_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1347 RXN-1347]
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***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1349 RXN-1349]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_10797]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_15395]]
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** [[pantograph]]-[[athaliana]]
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== Pathways  ==
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* [[PWY-7344]], UDP-D-galactose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7344 PWY-7344]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-6397]], mycolyl-arabinogalactan-peptidoglycan complex biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6397 PWY-6397]
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** '''2''' reactions found over '''17''' reactions in the full pathway
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* [[PWY-6317]], D-galactose degradation I (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7328]], superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7328 PWY-7328]
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** '''5''' reactions found over '''10''' reactions in the full pathway
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* [[COLANSYN-PWY]], colanic acid building blocks biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=COLANSYN-PWY COLANSYN-PWY]
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** '''5''' reactions found over '''11''' reactions in the full pathway
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* [[PWY66-422]], D-galactose degradation V (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-422 PWY66-422]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-3821]], D-galactose degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3821 PWY-3821]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[synechocystis]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* ARACYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22168 22168]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY-5410 PWY-5410]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-3193}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00291 R00291]
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{{#set: common name=traumatin and (Z)-3-hexen-1-yl acetate biosynthesis}}
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* UNIPROT:
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{{#set: common name=13-lipoxygenase and 13-hydroperoxide lyase pathway|13-LOX and 13-HPL pathway}}
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** [http://www.uniprot.org/uniprot/P35673 P35673]
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{{#set: reaction found=1}}
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** [http://www.uniprot.org/uniprot/P22715 P22715]
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{{#set: total reaction=9}}
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** [http://www.uniprot.org/uniprot/P21977 P21977]
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{{#set: completion rate=11.0}}
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** [http://www.uniprot.org/uniprot/P24325 P24325]
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** [http://www.uniprot.org/uniprot/Q9CE66 Q9CE66]
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** [http://www.uniprot.org/uniprot/Q57664 Q57664]
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** [http://www.uniprot.org/uniprot/P55180 P55180]
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** [http://www.uniprot.org/uniprot/Q9PNG3 Q9PNG3]
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** [http://www.uniprot.org/uniprot/P56997 P56997]
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** [http://www.uniprot.org/uniprot/Q59083 Q59083]
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** [http://www.uniprot.org/uniprot/Q44016 Q44016]
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** [http://www.uniprot.org/uniprot/Q45291 Q45291]
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** [http://www.uniprot.org/uniprot/P96995 P96995]
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** [http://www.uniprot.org/uniprot/P45602 P45602]
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** [http://www.uniprot.org/uniprot/P18645 P18645]
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** [http://www.uniprot.org/uniprot/P26503 P26503]
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** [http://www.uniprot.org/uniprot/P40801 P40801]
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** [http://www.uniprot.org/uniprot/Q05026 Q05026]
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** [http://www.uniprot.org/uniprot/P56985 P56985]
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** [http://www.uniprot.org/uniprot/Q51148 Q51148]
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** [http://www.uniprot.org/uniprot/Q56093 Q56093]
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** [http://www.uniprot.org/uniprot/Q42605 Q42605]
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** [http://www.uniprot.org/uniprot/Q60109 Q60109]
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** [http://www.uniprot.org/uniprot/P72903 P72903]
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** [http://www.uniprot.org/uniprot/P72915 P72915]
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** [http://www.uniprot.org/uniprot/O66256 O66256]
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** [http://www.uniprot.org/uniprot/O64749 O64749]
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** [http://www.uniprot.org/uniprot/Q9SN58 Q9SN58]
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** [http://www.uniprot.org/uniprot/Q8VZ26 Q8VZ26]
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** [http://www.uniprot.org/uniprot/Q43070 Q43070]
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** [http://www.uniprot.org/uniprot/Q9T0A7 Q9T0A7]
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** [http://www.uniprot.org/uniprot/O65780 O65780]
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** [http://www.uniprot.org/uniprot/O65781 O65781]
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** [http://www.uniprot.org/uniprot/Q9RMC0 Q9RMC0]
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** [http://www.uniprot.org/uniprot/P04397 P04397]
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** [http://www.uniprot.org/uniprot/P09147 P09147]
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** [http://www.uniprot.org/uniprot/P13226 P13226]
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** [http://www.uniprot.org/uniprot/P09609 P09609]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=udp-glucose_4-epimerase_5}}
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{{#set: common name=udp-glucose_4-epimerase}}
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{{#set: ec number=EC-5.1.3.2}}
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{{#set: gene associated=Tiso_gene_3236|Tiso_gene_9823|Tiso_gene_10797|Tiso_gene_15395}}
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{{#set: in pathway=PWY-7344|PWY-6397|PWY-6317|PWY-6527|PWY-7328|COLANSYN-PWY|PWY66-422|PWY-3821}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis|athaliana|esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:10, 21 March 2018

Pathway PWY-5410

  • taxonomic range:
  • common name:
    • traumatin and (Z)-3-hexen-1-yl acetate biosynthesis
  • Synonym(s):
    • 13-lipoxygenase and 13-hydroperoxide lyase pathway
    • 13-LOX and 13-HPL pathway

Reaction(s) found

1 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5410&oldid=39938"