Difference between revisions of "Tiso gene 1584"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5285 RXN-5285] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** protochlorophyllide_re...")
(Created page with "Category:Gene == Gene Tiso_gene_1584 == * right end position: ** 4613 * transcription direction: ** POSITIVE * left end position: ** 4123 * centisome position: ** 17.89341...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5285 RXN-5285] ==
+
== Gene Tiso_gene_1584 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 4613
−
* common name:
+
* transcription direction:
−
** ORF
+
** POSITIVE
−
** protochlorophyllide_reductase
+
* left end position:
−
* ec number:
+
** 4123
−
** [http://enzyme.expasy.org/EC/1.3.1.33 EC-1.3.1.33]
+
* centisome position:
 +
** 17.893414   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[RXN-15556]]
−
** 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[DIVINYL-PROTOCHLOROPHYLLIDE-A]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[DIVINYLCHLOROPHYLLIDE-A]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 3,8-divinyl protochlorophyllide a[c] '''=>''' 1 NADP+[c] '''+''' 1 3,8-divinyl chlorophyllide a[c]
+
* Reaction: [[UBIQUITIN--PROTEIN-LIGASE-RXN]]
−
 
+
** Source: [[annotation-in-silico_annotation]]
−
== Genes associated with this reaction  ==
+
*** Assignment: ec-number
−
Genes have been associated with this reaction based on different elements listed below.
+
== Pathways associated ==
−
* [[Tiso_gene_10077]]
+
* [[PWY-7511]]
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_19518]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_17141]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
== Pathways  ==
+
−
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[esiliculosus]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: right end position=4613}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R06286 R06286]
+
{{#set: transcription direction=POSITIVE}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: left end position=4123}}
−
{{#set: common name=ORF}}
+
{{#set: centisome position=17.893414    }}
−
{{#set: common name=protochlorophyllide_reductase}}
+
{{#set: reaction associated=RXN-15556|UBIQUITIN--PROTEIN-LIGASE-RXN}}
−
{{#set: ec number=EC-1.3.1.33}}
+
{{#set: pathway associated=PWY-7511}}
−
{{#set: gene associated=Tiso_gene_10077|Tiso_gene_19518|Tiso_gene_17141}}
+
−
{{#set: in pathway=CHLOROPHYLL-SYN}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 19:11, 21 March 2018

Gene Tiso_gene_1584

  • right end position:
    • 4613
  • transcription direction:
    • POSITIVE
  • left end position:
    • 4123
  • centisome position:
    • 17.893414
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1584&oldid=40092"