Difference between revisions of "PWY-6603"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCSEMIALDDEHYDROG-RXN SUCCSEMIALDDEHYDROG-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6603 PWY-6603] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3208 TAX-32...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCSEMIALDDEHYDROG-RXN SUCCSEMIALDDEHYDROG-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6603 PWY-6603] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3208 TAX-3208]
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* ec number:
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* common name:
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** [http://enzyme.expasy.org/EC/1.2.1.79 EC-1.2.1.79]
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** dicranin biosynthesis
 
* Synonym(s):
 
* Synonym(s):
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** 9,12,15-octadecatrien-6-ynoic acid biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''1''' reactions found over '''4''' reactions in the full pathway
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** 1 [[NADP]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[SUCC-S-ALD]][c] '''=>''' 1 [[NADPH]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[SUC]][c]
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* [[RXN-11680]]
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* With common name(s):
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** 5 associated gene(s):
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** 1 NADP+[c] '''+''' 1 H2O[c] '''+''' 1 succinate semialdehyde[c] '''=>''' 1 NADPH[c] '''+''' 2 H+[c] '''+''' 1 succinate[c]
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*** [[Tiso_gene_9580]]
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*** [[Tiso_gene_8027]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_18205]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_18056]]
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* [[Tiso_gene_6952]]
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*** [[Tiso_gene_7427]]
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** [[pantograph]]-[[synechocystis]]
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** 2 reconstruction source(s) associated:
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== Pathways  ==
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*** [[annotation-in-silico_annotation]]
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* [[3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]], 4-hydroxyphenylacetate degradation: [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYPHENYLACETATE-DEGRADATION-PWY 3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]
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*** [[orthology-esiliculosus]]
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** '''2''' reactions found over '''8''' reactions in the full pathway
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== Reaction(s) not found ==
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* [[PWY-6537]], 4-aminobutanoate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6537 PWY-6537]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11681 RXN-11681]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11682 RXN-11682]
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* [[PWY-6993]], nicotine degradation II (pyrrolidine pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6993 PWY-6993]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8347 RXN-8347]
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** '''2''' reactions found over '''11''' reactions in the full pathway
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* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[P181-PWY]], nicotine degradation I (pyridine pathway): [http://metacyc.org/META/NEW-IMAGE?object=P181-PWY P181-PWY]
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** '''2''' reactions found over '''17''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[synechocystis]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-3208}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13213 13213]
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{{#set: common name=dicranin biosynthesis}}
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* LIGAND-RXN:
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{{#set: common name=9,12,15-octadecatrien-6-ynoic acid biosynthesis}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00714 R00714]
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{{#set: reaction found=1}}
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* UNIPROT:
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{{#set: total reaction=4}}
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** [http://www.uniprot.org/uniprot/Q9JTN7 Q9JTN7]
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{{#set: completion rate=25.0}}
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** [http://www.uniprot.org/uniprot/P25526 P25526]
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** [http://www.uniprot.org/uniprot/O85997 O85997]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-1.2.1.79}}
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{{#set: gene associated=Tiso_gene_6952}}
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{{#set: in pathway=3-HYDROXYPHENYLACETATE-DEGRADATION-PWY|PWY-6537|PWY-6993|P105-PWY|P181-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis}}
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Latest revision as of 19:12, 21 March 2018

Pathway PWY-6603

  • taxonomic range:
  • common name:
    • dicranin biosynthesis
  • Synonym(s):
    • 9,12,15-octadecatrien-6-ynoic acid biosynthesis

Reaction(s) found

1 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6603&oldid=40147"