Difference between revisions of "RXN-3701"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=BILIVERDINE BILIVERDINE] == * smiles: ** C=CC1(=C(C)C(NC1=CC4(=C(C)C(CCC(=O)[O-])=C(C=C2(C(CCC(...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-3701 RXN-3701] == * direction: ** REVERSIBLE * common name: ** rab_proteins_geranylgeranyltrans...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=BILIVERDINE BILIVERDINE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-3701 RXN-3701] ==
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* smiles:
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* direction:
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** C=CC1(=C(C)C(NC1=CC4(=C(C)C(CCC(=O)[O-])=C(C=C2(C(CCC(=O)[O-])=C(C)C(=N2)C=C3(C(C)=C(C=C)C(=O)N3)))N4))=O)
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** REVERSIBLE
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* inchi key:
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** InChIKey=QBUVFDKTZJNUPP-BBROENKCSA-L
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* common name:
 
* common name:
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** biliverdin-IX-α
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** rab_proteins_geranylgeranyltransferase_component_a_2
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* molecular weight:
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** protein_geranylgeranyltransferase_type_ii
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** 580.639   
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* ec number:
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** [http://enzyme.expasy.org/EC/2.5.1.60 EC-2.5.1.60]
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** [http://enzyme.expasy.org/EC/2.5.1.59 EC-2.5.1.59]
 
* Synonym(s):
 
* Synonym(s):
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** dehydrobilirubin
 
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** uteroverdine
 
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** biliverdine
 
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** biliverdin
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[1.3.7.4-RXN]]
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* With identifiers:
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* [[BILIVERDIN-REDUCTASE-RXN]]
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** 1 [[GERANYLGERANYL-PP]][c] '''+''' 1 [[PROT-CYS]][c] '''<=>''' 1 [[PPI]][c] '''+''' 1 [[S-GERANYLGERANYL-PROTEIN]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[HEME-OXYGENASE-DECYCLIZING-RXN]]
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** 1 geranylgeranyl diphosphate[c] '''+''' 1 a [protein]-L-cysteine[c] '''<=>''' 1 diphosphate[c] '''+''' 1 a [protein]-S-geranylgeranyl-L-cysteine[c]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_18628]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_18627]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_18785]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* LIGAND-CPD:
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{{#set: direction=REVERSIBLE}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00500 C00500]
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{{#set: common name=rab_proteins_geranylgeranyltransferase_component_a_2}}
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* CHEBI:
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{{#set: common name=protein_geranylgeranyltransferase_type_ii}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57991 57991]
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{{#set: ec number=EC-2.5.1.60}}
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* METABOLIGHTS : MTBLC57991
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{{#set: ec number=EC-2.5.1.59}}
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* PUBCHEM:
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{{#set: gene associated=Tiso_gene_18628|Tiso_gene_18627|Tiso_gene_18785}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25245769 25245769]
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{{#set: in pathway=}}
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* HMDB : HMDB01008
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: smiles=C=CC1(=C(C)C(NC1=CC4(=C(C)C(CCC(=O)[O-])=C(C=C2(C(CCC(=O)[O-])=C(C)C(=N2)C=C3(C(C)=C(C=C)C(=O)N3)))N4))=O)}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: inchi key=InChIKey=QBUVFDKTZJNUPP-BBROENKCSA-L}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: common name=biliverdin-IX-&alpha;}}
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{{#set: molecular weight=580.639    }}
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{{#set: common name=dehydrobilirubin|uteroverdine|biliverdine|biliverdin}}
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{{#set: consumed by=1.3.7.4-RXN|BILIVERDIN-REDUCTASE-RXN}}
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{{#set: produced by=HEME-OXYGENASE-DECYCLIZING-RXN}}
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Latest revision as of 19:15, 21 March 2018

Reaction RXN-3701

  • direction:
    • REVERSIBLE
  • common name:
    • rab_proteins_geranylgeranyltransferase_component_a_2
    • protein_geranylgeranyltransferase_type_ii
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-3701&oldid=40414"