Difference between revisions of "BILIVERDINE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11065 RXN-11065] == * direction: ** LEFT-TO-RIGHT * common name: ** beta-lactamase * ec number:...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=BILIVERDINE BILIVERDINE] == * smiles: ** C=CC1(=C(C)C(NC1=CC4(=C(C)C(CCC(=O)[O-])=C(C=C2(C(CCC(...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11065 RXN-11065] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=BILIVERDINE BILIVERDINE] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** C=CC1(=C(C)C(NC1=CC4(=C(C)C(CCC(=O)[O-])=C(C=C2(C(CCC(=O)[O-])=C(C)C(=N2)C=C3(C(C)=C(C=C)C(=O)N3)))N4))=O)
 
* common name:
 
* common name:
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** beta-lactamase
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** biliverdin-IX-α
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* ec number:
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* inchi key:
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** [http://enzyme.expasy.org/EC/3.4.16.4 EC-3.4.16.4]
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** InChIKey=QBUVFDKTZJNUPP-BBROENKCSA-L
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* molecular weight:
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** 580.639   
 
* Synonym(s):
 
* Synonym(s):
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** dehydrobilirubin
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** uteroverdine
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** biliverdine
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** biliverdin
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[1.3.7.4-RXN]]
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** 3 [[WATER]][c] '''+''' 2 [[CPD-12259]][c] '''=>''' 1 [[CPD-12230]][c] '''+''' 1 [[UNDECAPRENYL-DIPHOSPHATE]][c] '''+''' 4 [[D-ALANINE]][c] '''+''' 1 [[PROTON]][c]
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* [[BILIVERDIN-REDUCTASE-RXN]]
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* With common name(s):
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== Reaction(s) known to produce the compound ==
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** 3 H2O[c] '''+''' 2 a peptidoglycan dimer (S. aureus)[c] '''=>''' 1 a peptidoglycan with D,D cross-link (S. aureus)[c] '''+''' 1 di-trans,octa-cis-undecaprenyl diphosphate[c] '''+''' 4 D-alanine[c] '''+''' 1 H+[c]
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* [[HEME-OXYGENASE-DECYCLIZING-RXN]]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_18870]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-5265]], peptidoglycan biosynthesis II (staphylococci): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5265 PWY-5265]
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** '''3''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* LIGAND-CPD:
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{{#set: common name=beta-lactamase}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00500 C00500]
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{{#set: ec number=EC-3.4.16.4}}
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* HMDB : HMDB01008
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{{#set: gene associated=Tiso_gene_18870}}
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* CHEBI:
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{{#set: in pathway=PWY-5265}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57991 57991]
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{{#set: reconstruction category=annotation}}
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* METABOLIGHTS : MTBLC57991
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{{#set: reconstruction tool=pathwaytools}}
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* PUBCHEM:
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{{#set: reconstruction source=in-silico_annotation}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25245769 25245769]
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{{#set: smiles=C=CC1(=C(C)C(NC1=CC4(=C(C)C(CCC(=O)[O-])=C(C=C2(C(CCC(=O)[O-])=C(C)C(=N2)C=C3(C(C)=C(C=C)C(=O)N3)))N4))=O)}}
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{{#set: common name=biliverdin-IX-α}}
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{{#set: inchi key=InChIKey=QBUVFDKTZJNUPP-BBROENKCSA-L}}
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{{#set: molecular weight=580.639    }}
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{{#set: common name=dehydrobilirubin|uteroverdine|biliverdine|biliverdin}}
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{{#set: consumed by=1.3.7.4-RXN|BILIVERDIN-REDUCTASE-RXN}}
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{{#set: produced by=HEME-OXYGENASE-DECYCLIZING-RXN}}

Latest revision as of 19:15, 21 March 2018

Metabolite BILIVERDINE

  • smiles:
    • C=CC1(=C(C)C(NC1=CC4(=C(C)C(CCC(=O)[O-])=C(C=C2(C(CCC(=O)[O-])=C(C)C(=N2)C=C3(C(C)=C(C=C)C(=O)N3)))N4))=O)
  • common name:
    • biliverdin-IX-α
  • inchi key:
    • InChIKey=QBUVFDKTZJNUPP-BBROENKCSA-L
  • molecular weight:
    • 580.639
  • Synonym(s):
    • dehydrobilirubin
    • uteroverdine
    • biliverdine
    • biliverdin

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • LIGAND-CPD:
  • HMDB : HMDB01008
  • CHEBI:
  • METABOLIGHTS : MTBLC57991
  • PUBCHEM:
"C=CC1(=C(C)C(NC1=CC4(=C(C)C(CCC(=O)[O-])=C(C=C2(C(CCC(=O)[O-])=C(C)C(=N2)C=C3(C(C)=C(C=C)C(=O)N3)))N4))=O)" cannot be used as a page name in this wiki.




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