Difference between revisions of "PWY-6894"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FGAMSYN-RXN FGAMSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoribosylformylgly...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6894 PWY-6894] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Pathway]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FGAMSYN-RXN FGAMSYN-RXN] ==
+
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6894 PWY-6894] ==
−
* direction:
+
* taxonomic range:
−
** LEFT-TO-RIGHT
+
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
−
** phosphoribosylformylglycinamidine_synthase-like
+
** thiamine diphosphate biosynthesis I (E. coli)
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/6.3.5.3 EC-6.3.5.3]
+
 
* Synonym(s):
 
* Synonym(s):
 +
** vitamin B1 biosynthesis
 +
** thiamin diphosphate biosynthesis I (E. coli)
  
−
== Reaction Formula ==
+
== Reaction(s) found ==
−
* With identifiers:
+
'''1''' reactions found over '''2''' reactions in the full pathway
−
** 1 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE]][c]
+
* [[RXN-12611]]
−
* With common name(s):
+
** 3 associated gene(s):
−
** 1 ATP[c] '''+''' 1 L-glutamine[c] '''+''' 1 H2O[c] '''+''' 1 N2-formyl-N1-(5-phospho-β-D-ribosyl)glycinamide[c] '''=>''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 phosphate[c] '''+''' 1 L-glutamate[c] '''+''' 1 2-(formamido)-N1-(5-phospho-β-D-ribosyl)acetamidine[c]
+
*** [[Tiso_gene_2159]]
−
 
+
*** [[Tiso_gene_2160]]
−
== Genes associated with this reaction  ==
+
*** [[Tiso_gene_10320]]
−
Genes have been associated with this reaction based on different elements listed below.
+
** 1 reconstruction source(s) associated:
−
* [[Tiso_gene_5865]]
+
*** [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
+
== Reaction(s) not found ==
−
***EC-NUMBER
+
* [http://metacyc.org/META/NEW-IMAGE?object=THI-P-KIN-RXN THI-P-KIN-RXN]
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
== Pathways  ==
+
−
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
+
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[athaliana]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* ECOCYC:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17129 17129]
+
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-6894 PWY-6894]
−
* LIGAND-RXN:
+
{{#set: taxonomic range=TAX-2}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04463 R04463]
+
{{#set: common name=thiamine diphosphate biosynthesis I (E. coli)}}
−
* UNIPROT:
+
{{#set: common name=vitamin B1 biosynthesis|thiamin diphosphate biosynthesis I (E. coli)}}
−
** [http://www.uniprot.org/uniprot/O67691 O67691]
+
{{#set: reaction found=1}}
−
** [http://www.uniprot.org/uniprot/Q9UXW5 Q9UXW5]
+
{{#set: total reaction=2}}
−
** [http://www.uniprot.org/uniprot/Q9PNY0 Q9PNY0]
+
{{#set: completion rate=50.0}}
−
** [http://www.uniprot.org/uniprot/O28339 O28339]
+
−
** [http://www.uniprot.org/uniprot/Q9PHZ7 Q9PHZ7]
+
−
** [http://www.uniprot.org/uniprot/O26270 O26270]
+
−
** [http://www.uniprot.org/uniprot/Q59042 Q59042]
+
−
** [http://www.uniprot.org/uniprot/Q58660 Q58660]
+
−
** [http://www.uniprot.org/uniprot/O27427 O27427]
+
−
** [http://www.uniprot.org/uniprot/Q9JWC5 Q9JWC5]
+
−
** [http://www.uniprot.org/uniprot/P35852 P35852]
+
−
** [http://www.uniprot.org/uniprot/P38972 P38972]
+
−
** [http://www.uniprot.org/uniprot/Q55843 Q55843]
+
−
** [http://www.uniprot.org/uniprot/Q55037 Q55037]
+
−
** [http://www.uniprot.org/uniprot/P12041 P12041]
+
−
** [http://www.uniprot.org/uniprot/P12042 P12042]
+
−
** [http://www.uniprot.org/uniprot/P15254 P15254]
+
−
** [http://www.uniprot.org/uniprot/O14228 O14228]
+
−
** [http://www.uniprot.org/uniprot/P35421 P35421]
+
−
** [http://www.uniprot.org/uniprot/Q9ZB07 Q9ZB07]
+
−
** [http://www.uniprot.org/uniprot/Q9ZB06 Q9ZB06]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=phosphoribosylformylglycinamidine_synthase-like}}
+
−
{{#set: ec number=EC-6.3.5.3}}
+
−
{{#set: gene associated=Tiso_gene_5865}}
+
−
{{#set: in pathway=PWY-6121|PWY-6122|PWY-6277}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=athaliana}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 19:15, 21 March 2018

Pathway PWY-6894

  • taxonomic range:
  • common name:
    • thiamine diphosphate biosynthesis I (E. coli)
  • Synonym(s):
    • vitamin B1 biosynthesis
    • thiamin diphosphate biosynthesis I (E. coli)

Reaction(s) found

1 reactions found over 2 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6894&oldid=40431"