Difference between revisions of "P108-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASNSYNB-RXN ASNSYNB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** asparagine_synthetase *...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P108-PWY P108-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASNSYNB-RXN ASNSYNB-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P108-PWY P108-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** asparagine_synthetase
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** pyruvate fermentation to propanoate I
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** asparagine_synthetase_domaincontaining_protein_putat
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* ec number:
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** [http://enzyme.expasy.org/EC/6.3.5.4 EC-6.3.5.4]
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* Synonym(s):
 
* Synonym(s):
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** succinate-propionate fermentation pathway
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** pyruvate fermentation to propionate I
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** succinate-propanoate fermentation pathway
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''3''' reactions found over '''7''' reactions in the full pathway
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** 1 [[WATER]][c] '''+''' 1 [[L-ASPARTATE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLN]][c] '''=>''' 1 [[GLT]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ASN]][c] '''+''' 1 [[PPI]][c]
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* [[FUMHYDR-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 H2O[c] '''+''' 1 L-aspartate[c] '''+''' 1 ATP[c] '''+''' 1 L-glutamine[c] '''=>''' 1 L-glutamate[c] '''+''' 1 AMP[c] '''+''' 1 H+[c] '''+''' 1 L-asparagine[c] '''+''' 1 diphosphate[c]
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*** [[Tiso_gene_3691]]
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*** [[Tiso_gene_6720]]
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== Genes associated with this reaction  ==
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** 6 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-experimental_annotation]]
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* [[Tiso_gene_2973]]
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*** [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** [[orthology-athaliana]]
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** EXPERIMENTAL_ANNOTATION
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*** [[manual-primary_network]]
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***EC-NUMBER
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*** [[orthology-creinhardtii]]
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** [[pantograph]]-[[athaliana]]
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* [[MALATE-DEH-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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** 2 associated gene(s):
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* [[Tiso_gene_7495]]
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*** [[Tiso_gene_2323]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_1990]]
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***EC-NUMBER
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** 7 reconstruction source(s) associated:
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** [[pantograph]]-[[esiliculosus]]
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*** [[annotation-experimental_annotation]]
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== Pathways  ==
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*** [[orthology-esiliculosus]]
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* [[ASPARAGINE-BIOSYNTHESIS]], L-asparagine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=ASPARAGINE-BIOSYNTHESIS ASPARAGINE-BIOSYNTHESIS]
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*** [[annotation-in-silico_annotation]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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*** [[orthology-athaliana]]
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== Reconstruction information  ==
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*** [[orthology-synechocystis]]
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* [[orthology]]:
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*** [[manual-primary_network]]
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** [[pantograph]]:
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*** [[orthology-creinhardtii]]
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*** [[athaliana]]
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* [[METHYLMALONYL-COA-MUT-RXN]]
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*** [[esiliculosus]]
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** 1 associated gene(s):
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* [[manual]]:
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*** [[Tiso_gene_9771]]
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** [[primary_network]]
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** 2 reconstruction source(s) associated:
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* [[annotation]]:
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*** [[annotation-experimental_annotation]]
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** [[pathwaytools]]:
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*** [[annotation-in-silico_annotation]]
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*** [[experimental_annotation]]
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== Reaction(s) not found ==
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*** [[in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.1.3.1-RXN 2.1.3.1-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=METHYLMALONYL-COA-EPIM-RXN METHYLMALONYL-COA-EPIM-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R601-RXN R601-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN0-268 RXN0-268]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00578 R00578]
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{{#set: common name=pyruvate fermentation to propanoate I}}
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* UNIPROT:
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{{#set: common name=succinate-propionate fermentation pathway|pyruvate fermentation to propionate I|succinate-propanoate fermentation pathway}}
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** [http://www.uniprot.org/uniprot/P22106 P22106]
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{{#set: reaction found=3}}
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** [http://www.uniprot.org/uniprot/P08243 P08243]
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{{#set: total reaction=7}}
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** [http://www.uniprot.org/uniprot/P19891 P19891]
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{{#set: completion rate=43.0}}
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** [http://www.uniprot.org/uniprot/P17714 P17714]
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** [http://www.uniprot.org/uniprot/P19251 P19251]
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** [http://www.uniprot.org/uniprot/P19252 P19252]
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** [http://www.uniprot.org/uniprot/Q58516 Q58516]
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** [http://www.uniprot.org/uniprot/Q9CDJ2 Q9CDJ2]
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** [http://www.uniprot.org/uniprot/Q9UZJ0 Q9UZJ0]
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** [http://www.uniprot.org/uniprot/O58829 O58829]
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** [http://www.uniprot.org/uniprot/Q9UZL3 Q9UZL3]
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** [http://www.uniprot.org/uniprot/O26514 O26514]
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** [http://www.uniprot.org/uniprot/Q42792 Q42792]
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** [http://www.uniprot.org/uniprot/P31752 P31752]
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** [http://www.uniprot.org/uniprot/P49091 P49091]
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** [http://www.uniprot.org/uniprot/P49089 P49089]
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** [http://www.uniprot.org/uniprot/P49088 P49088]
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** [http://www.uniprot.org/uniprot/P49090 P49090]
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** [http://www.uniprot.org/uniprot/P49092 P49092]
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** [http://www.uniprot.org/uniprot/P49093 P49093]
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** [http://www.uniprot.org/uniprot/P49094 P49094]
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** [http://www.uniprot.org/uniprot/Q43011 Q43011]
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** [http://www.uniprot.org/uniprot/P93167 P93167]
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** [http://www.uniprot.org/uniprot/O49076 O49076]
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** [http://www.uniprot.org/uniprot/P49078 P49078]
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** [http://www.uniprot.org/uniprot/Q21463 Q21463]
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** [http://www.uniprot.org/uniprot/O77330 O77330]
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** [http://www.uniprot.org/uniprot/P78753 P78753]
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** [http://www.uniprot.org/uniprot/Q9LFU1 Q9LFU1]
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** [http://www.uniprot.org/uniprot/Q9ZST7 Q9ZST7]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=asparagine_synthetase}}
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{{#set: common name=asparagine_synthetase_domaincontaining_protein_putat}}
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{{#set: ec number=EC-6.3.5.4}}
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{{#set: gene associated=Tiso_gene_2973|Tiso_gene_7495}}
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{{#set: in pathway=ASPARAGINE-BIOSYNTHESIS}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=athaliana|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:16, 21 March 2018

Pathway P108-PWY

  • taxonomic range:
  • common name:
    • pyruvate fermentation to propanoate I
  • Synonym(s):
    • succinate-propionate fermentation pathway
    • pyruvate fermentation to propionate I
    • succinate-propanoate fermentation pathway

Reaction(s) found

3 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=P108-PWY&oldid=40523"